Arvicola amphibius (Eurasian water vole): 119812976
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Entry
119812976 CDS
T08327
Symbol
Lig3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
119812976 (Lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aamp03400
]
119812976 (Lig3)
Enzymes [BR:
aamp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
119812976 (Lig3)
DNA repair and recombination proteins [BR:
aamp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
119812976 (Lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
119812976
NCBI-ProteinID:
XP_038183959
LinkDB
All DBs
Position
4:complement(38518521..38541369)
Genome browser
AA seq
1014 aa
AA seq
DB search
MTLAFKILFPRNLCALGRKELFLFPEQNHWSAIRQFSQRSETDLLRGCCLLRRKKPVLSF
QRGHLRPRATHLVFFPGSHVGLCTSPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRI
GKVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQISQ
HIADLSSKAAGTPKKKTAVQAKLTTTGQVTSPVKGASFVTSTNPRKFSGFSAAKANNSEQ
GPSNPAPKTSLSASKCDPKHKDCLLREFRKLCAMVAENPSYNTKTQIIQDFLQKGSAGDG
FHGDVYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNPDEMARDLEQGDVSETIRVFF
EQSKSFPPAAKSLLTIQEVDAFLLHLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKH
DLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNEQEVEKDPGRRRTLSVEASLM
TPVQPMLAEACKSIEYAMKKCPNGMFSEIKYDGERVQVHKKGDHFSYFSRSLKPVLPHKV
AHFKDYIPRAFPGGESMILDSEVLLIDNNTGKPLPFGTLGVHKKAAFQDANVCLFVFDCI
YFNDVSLMDRPLCERRKFLHDNMVEIRNRIMFSEMKQVTKASDLADMINRVIREGLEGLV
LKDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDP
DSQKWCTVTKCAGGHDDATLARLQKELDMVKISKDPSKIPSWLKINKIYYPDFIVPDPKK
AAVWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEKTDF
TVVAGDEGSSTTGGSSGESEGTAGSVVPHKAPKTPPSKSSASGKKTEQKLSNSSSRGGNK
IPKPSPMKPGDKLATKSSPVKVGVKRKAADETQCPTKVLLDVFTGVRLYLPPSTPDFKRL
KRYFVAFNGDLVQEFDMASATHVLGNRENNTEAQLVSPEWIWSCIRKRRLIAPC
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atgactttggctttcaagatcctcttcccgagaaacctttgtgcccttggcagaaaagaa
ctgttcctgttcccagaacagaatcactggtctgccataagacagttcagtcagaggtcg
gaaacagatctccttcgtgggtgctgcctcctccggagaaaaaagcctgtcctgtctttc
cagagagggcatctaagaccacgtgccacccaccttgttttcttcccaggatcgcatgtg
ggactctgtactagcccctgtgagatggcggagcagcggttctgtgtggactatgccaag
cggggcacagctggctgcaagaaatgcaaggagaagattgtaaaaggagtgtgccgcatt
ggcaaagtggtgcccaatcccttctccgagtctgggggcgatatgaaagagtggtaccat
attaagtgcatgtttgagaaactggagcgggcgcgggctaccacaaaaaaaattgaagat
ctcacagagctggagggctgggaagagctggaagataacgaaaaggaacagataagccag
cacattgcagacctgtcttctaaggcagctggtacaccaaagaagaaaaccgctgtccag
gctaagctgacaaccactggccaggtgacatccccagtgaaaggtgcttcgtttgtcacc
agtaccaatccccggaaattttctggattttcagcagccaaagccaacaactctgagcaa
ggcccttcaaaccctgcccctaagacaagtctgtctgcaagtaaatgtgaccctaagcac
aaagactgtctactgcgagagttccggaagctgtgcgccatggtggccgaaaaccctagc
tacaataccaagacccagatcatccaggactttttgcagaaaggctctgcaggagatggc
ttccacggcgatgtgtacctaacagtgaagctgttgcttccgggagtcattaagagtgtt
tacaacttgaacgataagcagattgtgaaactttttagccgcatttttaactgcaaccca
gatgaaatggcccgggatctggaacagggtgacgtgtctgagacgatcagagtcttcttt
gagcagagcaagtctttccccccagccgccaagagcctcctcaccatccaggaagtggat
gctttcctcttgcacctctccaagctcaccaaagaggatgagcagcagcaagccctgcag
gacattgcttccaggtgtacagccaatgaccttaagtgcatcatccggttgatcaaacat
gatctgaaaatgaactcaggtgcaaaacacgtgttagatgctcttgaccccaatgcttat
gaagcctttaaagcctcacgcaacctgcaggatgtggtggagcgggtccttcacaatgag
caggaggtggagaaggacccaggtcggcgacggactctgagcgttgaggcctcactgatg
actcctgtgcagcccatgctggctgaggcctgcaagtccatcgagtatgcaatgaagaag
tgtcccaatggcatgttctctgagatcaagtacgatggtgagcgagtccaggtgcataag
aagggggaccacttcagctacttcagccgcagtctcaagcctgtcctgcctcacaaggtg
gcccactttaaggactacatccccagagcttttcctgggggtgagagtatgatcctggac
tccgaggtgctcctgattgacaacaacacgggcaaaccactgccctttgggactctggga
gtgcacaagaaagctgccttccaggatgctaatgtctgcctgtttgtttttgattgtatc
tactttaatgatgtcagcttgatggacaggcctctttgtgagcgacgcaagtttcttcat
gacaacatggttgaaatccgtaaccggatcatgttctcagaaatgaagcaagtcacaaaa
gcctcagacctggctgacatgataaaccgggtgatccgagagggcttagaagggctggtg
ctgaaggatgtgaagggtacatacgagcctgggaagcggcactggctgaaagttaagaaa
gattatttgaacgagggggccatggccgatacagccgatctggtggttcttggggccttc
tatgggcaagggagcaaaggtggcatgatgtccatcttcctcatgggctgctatgatcct
gacagccagaagtggtgcactgtcaccaaatgtgctggaggccatgatgatgccacactt
gctcgactgcagaaggagctagacatggtgaagatcagcaaggatcccagcaagataccc
agttggctgaagatcaacaagatctactatcctgactttattgttcccgacccaaagaaa
gctgctgtgtgggagatcacgggagcagaattctccaaatctgaggctcacactgctgat
gggatctccatcagatttcctcgctgtacccgaatcagggatgataaggactggaaatct
gcaactaacctccctcaactcaaggagctgtaccagctgtctaaagaaaagacagacttc
accgtagtggctggagatgaggggagctccactactggaggtagcagtggtgagagtgag
ggcactgctgggtctgttgtaccccacaaggcccccaagacacctcccagtaagtcctct
gccagtggcaagaagactgaacagaagctgagtaactccagtagcagaggtggcaacaag
attccaaagccttcccccatgaaaccaggagacaagctggccacgaagtcttctccagtg
aaagtgggggtgaagaggaaagctgccgatgagacccaatgcccgacaaaggtgctgttg
gatgtcttcactggggtgcggctctacttgccaccttccacaccagacttcaagcggctc
aaacgctactttgtggcattcaacggggatctggtacaggaatttgacatggcctcagcc
acacatgtgctgggtaacagagagaacaacactgaggcccagctggtctctccagagtgg
atttggtcatgtatccgaaaacggaggctgatagccccctgctag
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