Arvicola amphibius (Eurasian water vole): 119813020
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Entry
119813020 CDS
T08327
Symbol
Slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
119813020 (Slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
aamp04121
]
119813020 (Slx4)
03400 DNA repair and recombination proteins [BR:
aamp03400
]
119813020 (Slx4)
Ubiquitin system [BR:
aamp04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
119813020 (Slx4)
DNA repair and recombination proteins [BR:
aamp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
119813020 (Slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
Motif
Other DBs
NCBI-GeneID:
119813020
NCBI-ProteinID:
XP_038184019
LinkDB
All DBs
Position
4:complement(92246769..92270975)
Genome browser
AA seq
1732 aa
AA seq
DB search
MDESDDDFRELCASFFQRVRKNATKEVSGERKKPKTAGSSQKRGTLKETSQAAARSKSLQ
GPSEKKPRSGSQASRTKKQGAPKSQEGVPALPVHGKGGVLAPAPQPVLCEKAQSIQTEST
PNGGSQPLPSCFTTTAVPSPSKPRASELVLQRMKQFKRADPERLRHASEDSSLKTTLEEN
VPRSSQAETVAENESKARLHATDSDAAMALALQQEFRKEEASSRHDSLEEKGLFFCQMCQ
KNLSAMNVTRREQHVNRCLDEAEKALRPALPQIPDCPICGKPFLTSKSRASHLKQCAVKM
EVGPQLLLQAVRLQTAQSEGGSSPPVPSNHVGGLKRKGATIKKEPQKRRKASKPEAPSED
VLVAMALSRSEMEQCSVVPPLRLENAFSQKIRLGAEKKSRRKKPPVCPPQLLTQDFETTS
RQIEDRVAQLLSEEVELSCTPPLPASKILKEELGHAGWRLQLPAGKRNFLWECSALTGAW
AEESFYTAGLVPPVVSPQPPKEHEVSLELPKQREPSTQRPPASHSSPPISHSPKSQLLSS
SQREHQALQDLVDLAEEGMSTSPWSSSLEAPTGLDLEPNSLPLTGFVLPSKKSLQRSDHA
SLCSLGLLVSDFGTMVNNPHLSDVQFQIDSGEVFYAHKFVLYARCPLLIQHVNAEGFSAV
EDGDLTQRILLNDVSSEAALAFLNYLYMADTDMPPSLAHELRALALRFGVSDLVQLCEQV
PVVTDLEGEQQEEKENENCRSRAENFQELLRSVWADEEEEAETLVKPELCEEDGENVNEA
EMEEIYEFAATQRKLLQAGSTADTDEDTVRLGEDSPGSEPSLAGAQSSRQTGQMESSGPV
SWEKERDSLPPQGQCLDWTGKAGTQEALKEAAGQPSSCSPSESHQLRSRECSPLLPAKAH
DDKQLFASTQREPSGLPRMTAGHEEPSDSARERQAEVARSPCFLLSQPPVGGSPSQSRLH
SYPTSSLSPSAPRPRSSISKAASPSSLSPVTPAKQRRDSTILTLLREPGHQKGKRGSSML
GCRNRGILISPAKSPPIDLTQSAPDPLSPRTQDPSCHVKKEDEVILLLDSDEELELEHTK
TELASKESPGGRTLLDVSPKSPELFSVIDVDEDQEHSQSPPKREAGLHREEGQREHQSAL
GSREIPWLFCSQKNSLDEGSSTDTSWLVPATPGACKSRDCSSQTQILSLKSRNLPDETAQ
HTPRPSIDRRTVQEAAQKFSVIVPYKLPVTQGAPESGRRGCRSPSHPYSRCHKPSLQSSC
PAPDLTKWPQKHSSPRPCLPNQATADEVVEVGDSDDEQEVASRQGNSSPVLDGDPPVPMG
DYCWHDEPLSPIPIDHLNLERTGPLTTSSPSHQSQEALRGDDCHSVGLLGSTPIRGSSGA
LRESQEQSSRAASPGSSKLSFMSPALWDDWDEEEQHSPEASAVAQMLSAGALKPDSPETP
KGANRKKNLPPKVPITPMPRYSIMETPVLKKELDRFGVRALPKRQMVLKLKEIFQYTHQT
LESDSEHELQSSQPPCSPEVPCSQASTADTYKPSRSGGYTQIKATAGLGAQRAKGSTKSK
SPQHRKKQRGESVSHPSRLPAGEPPVGPVGDALLPASQESVATSVDGSDNSFSSHSSSCG
FGAALESAGEDKDDEEGVSASQVARQTADTEEAVRRYICSTPALYRKVLTYQPLELAELQ
AELKQEGIPVAMGKLLDILDAQCITFTTAAARKEKLKQRRRQPLGRKRKDQK
NT seq
5199 nt
NT seq
+upstream
nt +downstream
nt
atggatgagtcagatgatgatttcagagaactctgtgccagctttttccaaagggtgaga
aaaaatgcaaccaaagaagtgtcaggagaaaggaagaagccgaagaccgccggtagctct
cagaagagaggcacactgaaagaaaccagtcaagctgccgccaggagcaaaagccttcaa
ggcccttcagagaagaaacctcgatcaggcagccaggcctctaggactaaaaagcaaggg
gcacccaaatctcaagaaggggtcccagctctccctgtgcatggaaagggcggtgtcctt
gctcctgccccacagcctgtgttgtgtgagaaagcacagagcattcagacagagagcact
cccaatggcggctcccagccccttccgtcctgcttcaccacaactgccgtgccaagtccc
tccaaacccagagcctcggagctggttctccaacggatgaagcagttcaagagagcagac
cctgagcgcttgcgccatgcttcagaagactcctccctaaagaccacactggaagaaaat
gtcccgaggagctctcaagcagagacggtggcagaaaacgagtctaaggccaggctccat
gccacagacagcgatgctgctatggccctggccttacagcaggagttcagaaaggaggaa
gcatcttcacgtcatgacagcttggaagagaaggggttgttcttctgccaaatgtgtcag
aaaaacctctctgcaatgaatgtgacccggagggagcaacatgtgaacagatgccttgat
gaggcagaaaaggcactgagacctgctctacctcagatccctgattgcccaatatgtggt
aaaccattcctcacctccaagagccgagcgagtcacttgaagcagtgtgcagtgaagatg
gaggtgggtccccagctcctgctccaggctgtgaggctacagaccgctcagtccgagggg
ggcagcagccctccagtacccagcaaccatgttggaggtttgaaacggaaaggagccacc
atcaagaaggagccacagaagaggcggaaggccagtaagcccgaggctccatctgaagat
gtgctggtggccatggctctgtctcgctctgagatggagcagtgttcagttgtgccccca
ctcagactggaaaatgctttttctcagaagatacggctaggagcagagaagaaaagtcgc
aggaagaaacccccagtgtgtcccccacagttgttaactcaggactttgagaccacaagt
agacagattgaggatcgcgtcgcccagctcctttcagaggaagtagaactatcctgtacc
ccgccacttcctgccagcaagattttaaaggaagaattggggcatgcaggctggcgtctg
cagctgcctgcaggaaagcggaattttctgtgggagtgcagtgccctcacaggagcctgg
gctgaggagtctttctatacagcaggcttggtccctccagtggtgtccccacagcctccc
aaggagcatgaggtgtcactggagctgcctaagcagcgagaaccaagtactcaaaggccc
cctgcttcccacagcagccctcccataagccacagccccaagagccagctgctgtcctcc
agtcagagggagcaccaagctcttcaggatcttgtggacttggcagaggaggggatgagc
accagcccatggtccagcagtctagaagcacccacagggttggacttggaacccaacagc
cttccactgactgggtttgtcctgccatccaagaagagccttcagaggagtgaccacgcc
tccctctgctcccttgggttgctggtgtctgactttgggacaatggtcaataatccacac
ctgagtgatgtccagttccagattgacagcggagaggtgttttatgcccacaagtttgtt
ctctatgcccgatgcccccttcttattcaacatgtaaacgctgaaggcttctctgctgtg
gaggacggggatctgacccagcgcatcctgctgaatgatgtgagctctgaggctgccctg
gcatttctgaactatctctacatggcagacactgacatgcctcccagcctggctcatgaa
ctgcgtgccctggccctcaggtttggtgtgagtgaccttgttcagctgtgtgaacaagtg
cctgtcgtgacagacttggagggagagcagcaggaggagaaggaaaacgagaactgcaga
agcagagctgagaacttccaagaactcttgaggtcagtgtgggcagatgaggaggaggaa
gcagagactttggtgaagcctgagctctgtgaagaagatggagaaaacgtgaatgaggca
gaaatggaagaaatttatgaattcgcagccactcagagaaagctgctccaggcaggaagc
acggcagacacagatgaggacacagtccggctcggggaggacagtccaggttctgagcct
tccctggcaggtgctcagagtagcaggcagacaggacagatggagtcatctgggccagtc
agctgggaaaaggaaagagattcccttccaccccagggccagtgcttggactggacaggg
aaagcagggacccaggaggcactaaaggaagcagctggccagcctagctcctgtagccct
tctgagagccaccagctgaggagtagagagtgctcacctttgctcccagccaaggcccat
gatgacaaacagctctttgcatcaactcaaagagaaccatctgggctgcccagaatgaca
gctggtcacgaagagccgagtgacagtgccagggaaaggcaggcagaggtggcccgttcc
ccctgcttcctcctgtcacagcctcctgtaggtggaagtcccagccagtcacggcttcac
tcatatcccacaagcagtttatccccgtcggcgccccggcctcgcagtagcatttccaag
gcggcatccccgagctcactgtctccagttacaccagctaagcagagaagggacagcacc
attctcacattactgagagaaccaggccaccagaagggtaaacgaggtagctccatgttg
ggatgcagaaataggggcatcctgatttccccggcaaagtctcctcccattgacttgacc
cagtcagcccctgatcccttgagtcccaggacccaggatccttcgtgtcatgtgaagaaa
gaggatgaggttatccttttactggattcggacgaggagctggaactagagcacaccaag
acagagttagcttctaaggagtccccaggaggaaggacacttctagatgttagccccaag
tcccctgaactgttttcagtcatcgatgtcgatgaagatcaagagcattcccaaagccca
ccaaagagagaagccgggctccacagggaagagggacagcgggagcatcagtctgctctg
ggaagcagagagatcccctggctgttctgcagtcagaagaacagcctggacgagggcagc
tctacagacacctcctggctggtgcctgccactccgggggcctgcaagagtcgtgattgc
tcatcacagacccaaatcttaagccttaagagcaggaacctgccagatgagactgctcag
cacacacccagaccatccatagaccgcaggactgtgcaggaagcagcccagaagttctcc
gtgatcgtgccctataaactgcccgtgactcagggagctcctgagagtgggcggcggggc
tgcagaagcccttcccatccatactccaggtgccacaagccttctttacagtcctcgtgt
cctgcccctgatcttaccaagtggccccagaaacactcatcaccaaggccatgcctgcca
aaccaggccacagctgatgaagtagtagaagttggggacagtgacgatgagcaggaggtg
gcttcccgtcaaggaaacagcagccctgtgctagatggtgaccccccagttcccatgggt
gactactgttggcatgatgagcctctctcaccaattccaattgaccacttgaatctggag
cggactggccccctgaccacaagcagtcccagccatcagtcccaggaggcgctgcgtggt
gatgactgccactctgtaggactcctgggcagcacccccattcgaggaagctctggggcc
ctgagagagtctcaagagcagtcttcacgggctgcctctccagggagcagcaaactgagt
ttcatgagcccagctctgtgggacgactgggacgaggaagagcaacactctccagaggcc
tcagcggtggcccaaatgctgagtgccggagctctgaagccagacagtccagagacacca
aaaggtgctaatcggaaaaagaacttgccccccaaagtgcctataactccaatgccaagg
tattcaatcatggagaccccagtgctgaagaaagagctggacaggtttggagtccgtgct
ctgcccaaacgccagatggttctaaaactgaaggagattttccagtacactcaccagacg
ctggagtcagactcggagcatgaactccagtcctcccagccaccgtgcagcccggaggtc
ccttgtagccaggcgtctactgctgatacctacaagccttcaaggtcaggaggctacacc
cagatcaaagccactgcaggtctgggggctcaaagagccaagggttccactaagagcaag
agccctcagcatcgaaagaaacagcgcggtgaaagtgtttcccacccaagcaggttgcca
gctggggagccgcctgtgggtcctgttggggacgccctgctcccagcctcccaggagtcc
gtggccacctctgtggatggcagtgacaactcctttagctctcacagttcctcctgtggt
tttggagctgccttggagtctgcaggtgaagacaaggacgatgaggagggggtcagtgca
tcacaggttgcccgccagaccgcagacacagaggaggcagtgagacgctacatctgctcc
acgcctgccctgtacaggaaggtgctgacataccagcctctcgagctggctgaactacag
gctgagctgaagcaggagggcattcctgtggccatgggcaagctgctggacatcctcgat
gcccagtgcatcaccttcacaactgctgcagcccggaaggagaagctgaaacagaggaga
cggcagcccctgggcaggaagagaaaggaccagaaatga
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integrated database retrieval system
