Arvicola amphibius (Eurasian water vole): 119814006
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Entry
119814006 CDS
T08327
Symbol
Xrn2
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03008
Ribosome biogenesis in eukaryotes
aamp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
119814006 (Xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
119814006 (Xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aamp03021
]
119814006 (Xrn2)
03019 Messenger RNA biogenesis [BR:
aamp03019
]
119814006 (Xrn2)
03009 Ribosome biogenesis [BR:
aamp03009
]
119814006 (Xrn2)
03016 Transfer RNA biogenesis [BR:
aamp03016
]
119814006 (Xrn2)
Transcription machinery [BR:
aamp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119814006 (Xrn2)
Messenger RNA biogenesis [BR:
aamp03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
119814006 (Xrn2)
Ribosome biogenesis [BR:
aamp03009
]
Eukaryotic type
Pre-60S particles
RNases
119814006 (Xrn2)
Transfer RNA biogenesis [BR:
aamp03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
119814006 (Xrn2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
119814006
NCBI-ProteinID:
XP_038185173
LinkDB
All DBs
Position
5:complement(29775142..29846243)
Genome browser
AA seq
950 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMEAAVEKQRVREEILAKGGFLPPEEVKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPKPCALCNQLGHEVKDCEGLPREKKGKHDELADSLPCAEGE
FIFLRLNVLREYLERELTMASLPFPFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQKE
KRKRMKRDQPAFTPSGILTPHALGSRNSPGCQVASNPRHAAYEMRMHSNSSPSVSPNTSF
ASDGSPSPLAGIKRKAEDSDSEPEPEDNIRLWEAGWKQRYYKNKFDVDAADEKFRRKVVQ
SYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFEGIADMSSEFEKGTKPFKPLEQLMG
VFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRA
ALEEVYPDLTPEENRRNSLGSDVLFVGKLHPLRDFILDLYQTGSTEPVDVPPELCHGIQG
KFSLDEEAILPDQTVCSPVPMLRDLTQNTSVSINFKDPQFAEDYVFKAVMLPGARKPAAV
LKPGDWEKSSNGRQWKPQLGFNRDRRPVHLDQAAFRTLGHVMPRGSGTGVYSNNAPPPAA
YQGSLHRPLLRGQAQIPKLMSNMRPQDSWRGPPPLFQQQRFDRSVGAEPLLPWNRMLQTQ
NAAFQPNQYQMLAGPGGYPPRRDDRGGRQGYPRDGRKYPLPPPSGRYSWN
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcgttcttccgctggctcagccgcaagtatccgtccatcattgtcaac
tgcgtggaggagaagccaaaagaatgcaatggtgtaaagattccagttgacgccagtaaa
cctaatccaaatgatgtggagtttgataatctgtacttggatatgaatggaatcatccat
ccctgtactcatcctgaagacaaaccagcaccaaaaaatgaagatgaaatgatggttgca
atttttgagtacattgacagactttttaatattgtaagaccaagaagactactctacatg
gcaatagatggagtggcaccacgtgcaaaaatgaaccaacagcgttcaaggaggtttaga
gcatcaaaggaaggaatggaagcagcagttgagaagcagcgagtcagagaagaaatactt
gcaaaaggtggctttcttcctccagaagaagtaaaagaaagatttgacagcaactgtatt
acaccaggaactgagttcatggacaatcttgctaaatgccttcgctattacatagctgat
cgtttaaataatgaccctgggtggaaaaatttgacagttatattatctgatgctagtgca
cctggtgaaggagaacacaaaatcatggattacattagaagacaaagagcccagcctaac
catgacccaaatacacatcattgtttgtgtggagctgatgctgatcttattatgcttggt
cttgctacacatgaacctaacttcaccataatcagagaagaattcaagccaaacaaaccc
aaaccatgtgctctttgtaatcagcttggacatgaggtcaaggattgtgaaggtttgcca
agagaaaagaagggaaagcatgatgaacttgcagatagtcttccttgtgcagaaggggag
tttatcttccttcggctgaatgttcttcgagagtatctggaaagagaactcaccatggcc
agcttaccattcccatttgatgtggagagaagcattgatgactgggtgttcatgtgcttc
tttgtgggcaatgatttccttcctcacttgccgtcactagagattagggaaggtgctatt
gatcgtttggttaacatatacaaaaacgtggtacacaaaactgggggttaccttacagaa
agtggctatgtcaatctacaaagagtacagatgatcatgttagcagttggtgaagttgaa
gatagcatttttaaaaagagaaaagatgatgaggacagttttagaagacgacagaaagaa
aaaagaaaaaggatgaagagagatcaaccagcttttactcctagtggaatattaacacct
catgccttgggttcaagaaattccccaggttgtcaagtagccagtaatccaagacacgcg
gcctatgaaatgaggatgcatagtaactctagtccctcagtatctcctaatacaagtttt
gcatctgatggctccccatctccactagcaggaattaagagaaaagcagaagacagtgac
agtgagccagagccagaggataacatcaggttatgggaggctggttggaagcagcgatac
tacaagaacaaatttgatgtagatgcagctgatgagaaattccggcgtaaggttgttcag
tcctatgttgaaggcctgtgctgggttcttcgatattattaccagggctgtgcttcctgg
aagtggtattatccattccattatgcaccatttgcctcagactttgaaggtattgcagac
atgtcttctgaatttgagaagggcacaaaaccgtttaaaccactggagcaactcatggga
gtctttccagctgcaagtggtaactttctgcccccatcatggcggaagctcatgagtgac
cctgattctagtataattgacttctatcctgaagattttgctattgatttgaatgggaag
aaatatgcatggcaaggtgttgctctattgccatttgtggatgaacgaaggctgcgagct
gccctagaggaagtgtaccctgacctcactccagaagagaacaggagaaatagtcttgga
agtgatgttttgtttgtggggaaacttcatccactacgtgacttcattttagacctgtat
cagacaggttccacagagccagtagatgtgccacctgaattgtgtcacgggattcaagga
aagttttctttggatgaagaagccattcttccagatcaaacagtatgttcccctgtgccc
atgttacgggacctgacacagaacacttcagtcagtattaattttaaagatccacaattt
gctgaagattatgtttttaaagctgtaatgcttccaggagcaaggaagccagcagcagtt
ttgaaacctggtgactgggaaaaatccagcaatgggcggcagtggaaaccccagcttggc
tttaatcgggaccggcggcctgttcacctagaccaggcagcttttagaactttaggccac
gttatgccaagaggctcggggactggtgtttacagcaacaatgcaccaccacctgcagct
taccagggcagcttacacaggccactgttgagaggtcaagctcagattccaaaacttatg
tcaaatatgaggccccaagattcctggcgaggtcctcctcctcttttccagcagcagaga
tttgacagaagtgttggagctgaacctctgctgccatggaaccggatgctccaaacccaa
aatgcagcttttcagccaaaccagtaccagatgctggctgggcctggaggatatccaccc
agacgtgatgatcgaggagggagacagggatatcccagagatggaaggaaataccctttg
ccaccaccctcaggaagatacagttggaattag
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