Arvicola amphibius (Eurasian water vole): 119814106
Help
Entry
119814106 CDS
T08327
Symbol
Npc1
Name
(RefSeq) NPC intracellular cholesterol transporter 1
KO
K12385
Niemann-Pick C1 protein
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
aamp04142
Lysosome
aamp04979
Cholesterol metabolism
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
119814106 (Npc1)
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
119814106 (Npc1)
09150 Organismal Systems
09154 Digestive system
04979 Cholesterol metabolism
119814106 (Npc1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
aamp02000
]
119814106 (Npc1)
Transporters [BR:
aamp02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
119814106 (Npc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NPC1_MLD
NPC1_N
Sterol-sensing
Patched
MMPL
ACR_tran
Motif
Other DBs
NCBI-GeneID:
119814106
NCBI-ProteinID:
XP_038185337
LinkDB
All DBs
Position
5:96776999..96824146
Genome browser
AA seq
1277 aa
AA seq
DB search
MSTRLPALGLLLLLLCPTQVFSQSCVWYGECGKAFGDKRYNCKYSGPPKPLPKDGYDLVQ
ELCPGFFFDNVSLCCDVQQLRTLKSNLQLPLQFLSRCPSCFYNLMTLFCELTCSPHQSQF
LNVTATENYIDPKTQENKTNVKELEYYVGQSFAHAMYNACRDVEAPSSNEKALGLLCGRD
ASACNATNWIEYMFNKDNGQAPFTITPIFSDLPIHDMEPMRNATKGCNESVDEVTGPCSC
QDCSIVCGPKPQPPPPAVPWKILGLDAMYVIMWITYMAFLFVFFGGLLAVWCHRRRYFVS
EYTPIDSNIAFSVNTSDSGEASCCDPLGAAFDGCLRRMFTKWGAFCVRNPTCVVFFSLVF
IAACSSGLVFVRVTTNPVELWSAPHSRARMEKEYFDKHFGPFFRTEQLIIQAPNTSVHIY
EPYPSGADVPFGPPLNKEILHQVLDLQIAIESITASYDNETVTLQDICVAPLSPYNKNCT
IMSVLNYFQNSHSVLDHQVGDDFFVYADYHTHFLYCARAPASLNDTSMLHDPCLGTFGGP
VFPWLVLGGYDDQNYNNATALVITFPVSNYYNDTEKLQRAQAWEKEFIDFVKNYKNPNLT
ISFIAERSIEDELNRESKSDVFTVAISYAIMFLYISLALGHIQSCGRLLVDSKISLGIAG
ILIVLSSVACSLGIFSYMGMPLTLIVIEVIPFLVLAVGVDNIFILVQTYQRDERLQEEAL
DQQLGRILGEVAPTMFLSSFSETSAFFFGALSSMPAVHTFSLFAGLAVFIDFLLQITCFV
SLLGLDIKRQENNRLDILCCVRGADDGRGIQASESYLFRFFKNSFAPLLLKDWLRPIVIA
VFVGVLSFSIAVVNKVEIGLDQSLSMPNDSYVIDYFKSLGQHLHSGPPVYFVLEEGHDYT
SREGQNMVCGGMGCDSDSLVQQIFNAAELDTYTRIGFAPSSWIDDYFDWVAPQSSCCRLY
NATHQFCNASVIDPTCVRCRPLTPEGKQRPQGKEFMKFLPMFLSDNPNPKCGKGGHAAYG
SAVNIIGDDTYVGATYFMTYHTVLKTSADYIDAMKKAQLVAKNITETMNSKGSNYRVFPY
SVFYVFYEQYLTIIDDTIFNLSVSLGSIFLVTLVILGCELWSAVIMCVTIAMILVNMFGV
MWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTMSTKGSRVSRAEEALAHMGSSVFSG
ITLTKFGGIVVLAFAKSQIFEIFYFRMYLAMVLLGATHGLIFLPVLLSYIGPSVTKAKRQ
TTQDRYKGTERERLLNF
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgcgcctcccggcccttggcctcctgctgctgctgctgtgccctacgcaggtg
ttttcacaatcctgtgtttggtatggagaatgtgggaaagcatttggagataagaggtac
aactgcaaatattctggtccaccaaaacccttaccgaaggacgggtatgacttggtgcag
gagctctgcccaggattcttcttcgacaatgtcagtctctgctgtgacgttcaacagctt
cggacactgaagagcaacctgcagctgccccttcagtttctgtccagatgtccgtcatgt
ttttataacctaatgaccctgttttgtgagctaacgtgtagccctcaccagagccagttt
ctgaacgtgacagccactgaaaattacattgatcccaagacccaggagaataaaacaaat
gtaaaggaattggagtactatgttggacagagctttgcacatgcaatgtacaatgcctgc
cgtgatgtggaggccccgtcaagtaacgaaaaggccttggggctcctgtgtggaagggat
gctagtgcctgcaatgccaccaactggatcgagtacatgttcaacaaagacaatgggcag
gcgccattcaccatcacccccatcttttcagaccttccaatccatgacatggagcccatg
agaaatgccaccaaaggctgcaatgagtctgtagatgaggtcacagggccatgcagctgc
caggactgctccattgtctgcggccccaagccccagcctccaccgcctgccgtaccctgg
aagatcttgggcttggatgccatgtatgtcatcatgtggatcacctacatggcatttctg
tttgtattttttggaggacttttggcagtgtggtgccacagaaggcggtattttgtgtct
gagtacactcccatcgacagcaatatagccttttctgtgaacaccagtgactctggggag
gcctcatgctgtgacccacttggcgcagcatttgatggctgtctgaggcgcatgttcaca
aagtggggagctttctgtgtccgaaaccccacctgcgtcgttttcttctcattggtcttc
atcgctgcatgctcttctgggctggtgtttgtccgggtcaccaccaatcctgtggagctc
tggtcagcccctcacagtcgggcccgcatggagaaggagtactttgataagcactttggg
cctttctttcgcacggaacagcttattatccaggcccccaacaccagtgtccacatctat
gagccatacccttctggagccgatgtgccctttgggcccccgctgaacaaagagattctg
caccaggtgcttgacctgcagattgccattgagagcattacggcatcttacgacaatgag
accgtgacacttcaagacatctgtgtggcccccctctcgccatacaacaagaactgcacc
attatgagtgtgttgaattacttccagaacagccattcggtgctggaccaccaagtaggc
gacgacttctttgtctatgccgactaccacacacacttcctgtactgtgcacgggctccc
gcctctctgaatgatacaagtatgctccatgatccttgcctgggtacgtttggaggaccc
gtgttcccctggcttgtgctgggcggctatgatgatcagaactacaacaatgccactgct
cttgtgattaccttccctgtcagcaattactataacgacacagagaagctccagagggcc
caggcctgggagaaagagtttattgattttgtgaaaaactacaagaatcccaatctgacc
atttctttcattgccgagcgaagcattgaagatgaactcaatcgggaaagtaagagtgat
gtgttcactgttgccatcagctacgccatcatgtttctgtacatttcacttgccttggga
cacatccagagctgtggccggcttctggtggattctaagatctccctgggcatcgcgggg
atcctgatagtgctgagctcagtggcctgttccctgggcatcttcagttacatggggatg
cccctgaccctcatcgtcatcgaagtcatcccattcttggtgctggccgtcggggtagac
aacatcttcattctcgtgcagacctaccagagagatgagcgtcttcaggaagaggcactg
gatcagcaactgggcagaatccttggggaagtggcccctactatgttcctttcatccttt
tctgagacctcagcgtttttctttggggcgctgtcctccatgccggctgtccacaccttc
tctctgtttgcgggcttggcggtcttcattgacttcctcctccagattacctgctttgtg
agcctcctggggttagatattaagaggcaagagaacaatcggctggacatcttgtgctgt
gtccgaggtgctgacgatggacgaggcatccaggcctctgaaagctacttgtttcgcttc
ttcaaaaactcctttgccccgcttctgctgaaggactggctgcgaccaattgtgatagcc
gtatttgtgggtgttctgtcattcagtattgcagtcgtgaacaaagtggaaattggattg
gatcagtctctttcaatgccaaatgattcctatgtgattgattatttcaagtccctcggt
cagcacctgcactcgggcccacctgtgtactttgtcctggaggaaggccatgactacacc
agccgcgaagggcagaacatggtgtgcggcggcatgggctgtgacagtgattccctggtg
cagcagatatttaacgcagctgagctggacacctacacccgcataggctttgccccctca
tcctggattgacgattactttgactgggttgcaccgcagtcctcctgctgtagactctac
aatgccactcaccagttttgcaacgcttctgtgattgacccaacctgtgtccgttgcaga
cctctaacaccagagggcaaacagaggcctcaagggaaagagttcatgaaattcctgccc
atgttcctttctgataaccccaaccctaaatgtggcaaagggggacatgctgcctatggt
tctgctgttaacatcatcggagatgacacttatgttggggccacttacttcatgacttac
cacactgtacttaagacctctgctgactacattgacgccatgaaaaaagcccagcttgta
gccaaaaacatcacagaaaccatgaattctaaggggagtaactaccgcgtgttcccatac
agtgtgttctacgtcttctacgagcagtacctgaccattattgatgacaccatctttaac
ctcagcgtgtctctgggctccatatttctggtgaccttggtgattctgggctgtgagttg
tggtcagcagtcatcatgtgtgtcaccatagctatgatcctggtcaacatgttcggtgtc
atgtggctgtggggtatcagtctaaacgctgtttccttggtcaacttggtgatgagctgt
ggcatttctgtggagttctgcagccatataacaagagcattcaccatgagtaccaaagga
agccgagtgagccgagcggaagaggcgctggcccacatgggtagttcagtattcagtgga
atcacacttacaaaatttggagggattgtggtgttggcctttgccaaatctcagattttt
gagatattttacttcaggatgtacttagccatggtcttactcggagccactcacgggctg
atatttcttcccgtcttactcagctacataggaccgtcggtaactaaagctaaaagacag
accactcaagatcgatacaaagggacagagcgagaacggctcctcaatttttag
DBGET
integrated database retrieval system
