Arvicola amphibius (Eurasian water vole): 119814177
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Entry
119814177 CDS
T08327
Symbol
Pcdh1
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
119814177 (Pcdh1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
aamp01009
]
119814177 (Pcdh1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
aamp04515
]
119814177 (Pcdh1)
Protein phosphatases and associated proteins [BR:
aamp01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
119814177 (Pcdh1)
Cell adhesion molecules [BR:
aamp04515
]
Cadherins
Protocadherins
119814177 (Pcdh1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
119814177
NCBI-ProteinID:
XP_038185525
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All DBs
Position
5:complement(115115730..115142290)
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AA seq
1240 aa
AA seq
DB search
MPPPWGCVTLGPKAKVLLILEPAGMGPLRPSPGPGGQRLLLPPLLLALLLLLAPSAGHTT
QVVYKVPEEQPPNTLIGSLAADYGFPDVGHLYKLEVGAPYLRVDGKTGDIFTTETSIDRE
GLRECQNQIPGNPCILEFEVSITDLVQNGSPRLLEGQIEVQDINDNTPNFASPVITLAIP
ENTNIGSLFPIPLATDRDAGPNGVASYELQAGPEAQELFGLQVAEDQEEKQPQLIVMGNL
DRERWDSYDLTIKVQDGGSPPRASSALLRVTVLDTNDNAPKFERPSYEAELSENSPIGHS
VIQVKANDSDQGANAEIDYTFHQAPEVVKRLLRLDRNTGLITVQGPVDREDLSTLRFSVL
ARDRGATPKSARAQVVVTVKDMNDNAPTIEIRGIGLVTHQDGMANISEDVAEETAVALVQ
VSDRDEGENAAVTCVVAGDVPFQLRQASETGSDSKKKYFLQTTTPLDYEKVKDYTIEIVA
VDSGNPPLSSTNSLKVQVVDVNDNAPVFTQSITEVAFPENNKPGEVVAEVTASDADSGSN
AELVYSLEPEPAAQGLFTISPENGEIRVKTSLDREQRDSYELKVVAADRGSPSLQGTATV
LVNVLDCNDNDPKFMLSGYNFSVMENMPALSPVGMVTVIDGDKGENARVQLSVEQDNGDF
VIQNGTGTILSSLSFDREQQSTYTFQLKAVDGGVPPRSAYVGVTINVLDENDNAPFITAP
SNTSHRLLTPQTRLGETVSQVTAEDIDSGVNAELTYSIAGGNPYGLFQIGSHSGAITLEK
EIERRHHGLHRLVVKVSDRGKPPRYGTALVHLYVNETLANRTLLETLLVHSLDTPLDIDI
AGDPEYERSKQRGNILFGVVAGVVAVALLIALAVLVRYCRQREAKSGYQAGKKETKDLYA
PKPSGKAAKGSKNKGKKSKSPKPVKPVEDEDEAGLQKSLKFNLMSDAPGDSPRIHLPLNY
PPGSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQVVQDLPPANTFVGTGDTTSTGSEQYS
DYSYRTNPPKYPSKQLPHRRVTFSATSQAQELQDPSQHSYYDSGLEESETPSSKSSSGPR
LGPLALPEDHYERTTPDGSIGEMEHPENDLRPLPDVAMTGTCTRECSEFGHSDTCWMPGQ
SSPSRRTKSSALKLSTFVPYQDRGGQEPAGAGSPSPPEDRNTKTAPVRLLPSYSAFSHSS
HDSCKDSATLEEIPLTQTSDFPPTATPASAQTAAKREIYL
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
atgccgccaccctggggctgtgtgaccctaggtcctaaagcaaaagttctcctgatcctg
gagcctgccgggatggggcctctgaggcccagccctgggcctggggggcagcggttgctg
ctgccccccttattgctggcactactgctcctgttggctccatctgcaggccataccacc
caggtagtatacaaggtgccagaagaacagccgcccaacactctcattgggagccttgcc
gctgactatggttttccagacgtgggtcatctgtacaaactagaggtaggtgctccatac
cttcgagtggatggcaagactggcgacattttcaccacagagacctccattgaccgagag
ggactccgtgaatgccagaaccagatccctgggaatccctgtatcctggagtttgaggtg
tctatcacggacctcgtgcagaatggcagcccccggctgctagagggacagatagaggtg
caggacatcaatgacaacacacccaactttgcctcgccggtcatcaccctggccatccct
gagaacaccaacatcggctcgctcttccccatcccactggccacagaccgtgatgctggc
cccaatggcgtagcatcctacgagctgcaggctgggcctgaggcccaggagctatttgga
ctgcaggtggctgaggaccaggaagagaagcagccacagctcattgtcatgggcaaccta
gaccgtgaacgctgggactcctatgacctcaccatcaaggtacaggatggcgggagtcct
ccacgagccagcagtgccctgctgcgtgtcactgtgcttgatacaaatgacaatgctccc
aagttcgagcggccatcctacgaagccgagctgtctgagaatagccccattggccactcg
gtcatccaggtgaaagccaatgactcggaccaaggtgccaatgcagagattgactatacc
ttccaccaggcgcctgaagttgtcaagcgtcttttgcgactagacagaaacactggactt
atcacggttcagggtcctgtggaccgtgaggatctaagcactctgcgcttctcagtgctc
gccagggaccgaggcgccaccccgaagagcgcccgcgcccaggtagtcgtgactgtgaaa
gacatgaacgacaatgcccccaccattgagatccgaggcatagggctggtgactcaccaa
gatgggatggctaacatctcagaggatgtggcagaggaaactgctgtggccttggtgcag
gtatctgatcgagatgaaggagagaatgcagcggtcacctgtgtcgtagcaggggatgtg
cccttccagctgcgccaggccagcgagacaggcagtgacagcaagaaaaagtacttcctg
cagaccaccacccctctcgactatgagaaagtcaaagactataccattgagatcgtggcc
gtggactccggcaaccccccactctctagcaccaactccctcaaggtccaggtggtagat
gtcaatgacaatgcccccgtcttcacccagagcatcactgaagtcgccttcccagaaaac
aacaagcctggggaagtagtggccgaggtcactgccagtgacgccgactccggctctaac
gcagagctggtgtattctctggaacccgagccagctgcccagggcctcttcactatctca
cctgagaacggagagatccgggtgaagacgtcgctggatcgggaacagagagacagctat
gagctgaaggtggtggcggctgaccggggcagtcccagccttcagggtacagccacggtc
cttgtgaacgtgctggactgcaatgacaacgaccccaagtttatgctgagtggctacaac
ttctcagtgatggagaacatgcccgcactgagtccagtgggcatggtgactgtcattgat
ggagacaagggggagaatgcccgggtacagctctcggtagagcaggacaacggtgacttt
gttatccagaacggcacaggcaccatcttatccagcttgagcttcgacagggagcaacaa
agtacctataccttccaactgaaggctgtagatggtggtgtcccacctcgctcagcatac
gtcggtgtcaccatcaatgtgctggatgagaatgacaatgcaccctttatcaccgccccc
tccaacacgtctcaccgactgctgaccccgcagacgcggcttggcgagacagtcagtcag
gtgacggcggaggacattgactctggtgtcaatgctgagctgacctatagcatcgctggt
ggcaacccttacggactcttccagattggatcgcattcaggtgccatcaccctggagaag
gagattgaacggcgccaccatgggttacaccgcctagtggtgaaggtcagtgaccgaggc
aagcccccacgctatggcacagccttggtccacctttacgtcaacgagaccttagccaac
cgcacactgctagagaccctccttgtccatagcctggacacaccactggacatcgacatc
gctggggacccagagtacgagcgttccaagcagcgtggcaacattctctttggtgtcgtg
gccggagtggtagctgtggctctactcatcgccctggcagtgcttgtgcgctactgccgg
cagcgggaggccaagagtggctatcaggctggcaagaaggagactaaggacctgtatgct
cccaagcccagcggcaaagcggctaagggaagcaagaacaaagggaagaagagcaagtcc
ccgaagcccgtgaagccagtggaggacgaggatgaggctgggctgcagaagtccctcaag
ttcaacctaatgagcgacgcccctggggacagtccccgaatccacctgcccctcaactac
ccaccaggcagccccgacttaggccgccattaccgctccaactccccactgccttccatc
cagctacaaccccagtcaccctcggcctccaagaagcaccaggtggtgcaggacctaccg
cctgcaaacacttttgtgggcaccggggacaccacgtccacgggctccgagcagtactcc
gactacagctatcgcaccaacccccccaaataccccagcaagcagttacctcaccgccgc
gtcaccttctcggccaccagtcaggcccaggagctgcaggacccatcacagcacagttat
tatgatagtggcctggaagagtctgaaacaccatctagcaagtcatcctcagggcctcga
cttggtcccctggccctacctgaggaccactatgagcgcaccacccctgacggcagcata
ggtgaaatggagcaccccgagaacgacctccgccctttgcccgacgtcgccatgacgggc
acttgtacccgggagtgcagcgagtttggtcactctgacacatgctggatgcctggccag
tcgtctcccagccgccggaccaagagcagcgccctcaaactctccaccttcgtgccttac
caggaccgaggagggcaggagcctgcgggcgccggcagccccagccccccggaagaccgg
aacaccaaaacggcccccgtgcgcctcctgccctcctacagtgccttctcccacagtagc
catgactcctgcaaggactcggccaccttggaggaaattcccttgacccagacctcggac
ttcccacccacagccacaccggcatctgcccagaccgccgccaagcgtgagatctacctg
tga
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