Arvicola amphibius (Eurasian water vole): 119814434
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Entry
119814434 CDS
T08327
Symbol
Vps18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp04140
Autophagy - animal
aamp04148
Efferocytosis
aamp05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
119814434 (Vps18)
04148 Efferocytosis
119814434 (Vps18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
119814434 (Vps18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
aamp04131
]
119814434 (Vps18)
Membrane trafficking [BR:
aamp04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
119814434 (Vps18)
Hops complex
119814434 (Vps18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_RING_C
Clathrin
zf-RING_Vps41
zf-RING_5
zf-C3HC4_2
zf-RING_16
KNOX2
zf-RING_2
zf-ANAPC11
zf_RING_Vps8
zf-RING_UBOX
zf-C3H2C3
zf-rbx1
WD40_Prp19
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
119814434
NCBI-ProteinID:
XP_038186086
LinkDB
All DBs
Position
5:complement(56355377..56366826)
Genome browser
AA seq
973 aa
AA seq
DB search
MASILDEYEDSLSRSAVLQTGCPTVGIPHSGYVNAQLEKEAPIFTKQRIDFTPAERITSL
VVSCNQLCMSLGKDTLLRIDLGKASEPNRVELGRKDDAKVHKMFLDHTGSHLLIALSSTE
VLYMNRNGQKVRPLARWKGQLVESVGWNKALGNESSTGPILVGTAQGQIFEAELSASEGG
LFGPAPDLYFRPLYVLNEEGGPAPVCSLEAERGPDGRGFVIATTRQRLFQFIGRAVDDAE
AQGFSGLFAAYTDHPPPFREFPSNLGYSELAFYTPKLRSAPRAFAWMMGDGVLYGSLDCG
RPDSLLSEERVWEYPAGVGPGASPPLAIVLTQFHFLLLLADRVEAVCTLTGQVVLRDHFL
EKFGPLRHMVKDSSTGHLWAYTERAVFRYHVQREARDVWRTYLDMNRFDLAKEYCRERPD
CLDTVLAREADFCFRQHRYLESARCYALTQSYFEEIALKFLEARQEEALAEFLQRKLAGL
KPTERTQATLLTTWLTELYLSRLGALQGDPDALNLYRDTRECFRTFLSSPRHKEWLFASR
ASIHELLASHGDTEHMVYFAVIMQDYERVVAYHCQHEAYEEALAVLAGHRDPQLFYKFSP
ILIRHIPRQLVDAWIEMGSRLDARQLIPALVNYSQGGKAQQVSQAIRYMEFCVNVLGETE
QAIHNYLLSLYARGQPASLLAYLEQAGASPHRVHYDLKYALRLCAEHGHHRACVHVYKVL
ELYEEAVDLALQVDVDLAKQCADLPEEDEELRKKLWLKIARHVVQEEEDVQTAMACLASC
PLLKIEDVLPFFPDFVTIDHFKEAICSSLKAYNHHIQELQREMEEATASAQRIRRDLQEL
RGRYGTVEPQDKCSTCDFPLLNRPFYVFLCGHMFHADCLLQAVRPGLPAYKQAKLEELQR
KLGAAPPPTKGSAKAKEAEAGASAGGPSREQLKADLDELVAAECVYCGELMIRSIDRPFI
DPQHYEEEHRSWL
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atggcatccatcctggatgagtatgaggactcactgtctcgctcggccgtcttgcagact
ggttgccctaccgtgggcatcccccattctgggtatgtaaacgcgcagctggagaaggaa
gcgcccatctttacgaagcagcgcatcgacttcactccagcagagcgcatcaccagcctt
gtggtctcctgtaatcagctctgcatgagcctgggcaaggatacgctgctccgcattgac
ctgggcaaggcaagtgaacccaaccgtgtggaactggggcgcaaggatgatgccaaagtt
cacaagatgttcctggaccacactggctctcacctgctgattgctctgagcagcaccgag
gtcctctatatgaaccggaatgggcagaaggtccggccattggcacgctggaagggacag
ttggtggagagtgttggctggaacaaagccctgggcaatgagagcagcactgggcccatc
ctggttggcacagcccaagggcagatctttgaagcagagctctccgccagcgaaggtggc
ctttttggccccgccccggatctctacttccggccactgtatgtgttaaatgaagaaggg
ggtccggcacccgtgtgctcccttgaggctgagcgcggccctgatgggcgaggctttgtc
atcgccacgactcggcagcgcctcttccagttcataggccgcgctgtagatgatgctgaa
gcccagggcttctcaggtctctttgctgcttatacggaccacccgcccccattccgtgaa
tttcctagcaatttggggtatagtgagttggctttctatacccccaagttacgctctgcg
cctcgtgccttcgcctggatgatgggagatggtgtgctgtatggctccctggactgcggg
cgtcctgattcgctgctgagcgaggagcgcgtgtgggagtatcccgcgggggtcgggcct
ggggccagtccacccctagccatcgtcttgactcagtttcattttctgctgctgctggca
gaccgggtggaggctgtgtgtacactgacagggcaggtggtacttcgggaccacttcctg
gagaagtttggaccactgaggcacatggtgaaggactcatccacaggtcacctctgggcc
tacaccgagcgtgccgtctttcggtaccacgtacagcgcgaagctcgggatgtctggcgc
acgtacctggacatgaaccgttttgacctggccaaagagtattgtcgagagcggccagac
tgcctggacacagtcctggcgcgagaggccgatttctgcttccgccagcaccgctacctg
gagagcgcccgctgttacgctctgacccagagctacttcgaggagattgccctcaagttt
ttggaggcccggcaagaagaggcactggccgagtttctacagcggaagctggccggcttg
aagccaacggagcgtacccaggccacactgctaaccacttggctgacggagctctacctg
agccggcttggtgccctgcagggtgacccggatgctctgaatctctaccgggatacccgg
gagtgcttccgcacctttctcagtagccctcggcacaaggagtggctctttgccagccgg
gcctctatccacgagctgctcgccagtcatggggacacagagcatatggtgtacttcgcg
gtgatcatgcaggactatgaacgggtggtggcttaccactgccagcacgaggcctatgag
gaggccctggctgtccttgccggccaccgtgacccccagctcttctacaaattctcaccc
atcctcatccgacatatcccgcgccagctagtagatgcctggattgagatgggcagccgc
ctggacgctcggcagctcatccctgccctggtgaactatagccagggtggtaaggctcag
caggtgagccaggccatccgctatatggaattctgcgtgaatgtcctcggcgagactgag
caagccattcacaactacctgctgtcgctgtatgcccgtggccagcccgcctcgctgctg
gcctacctggagcaggctggggccagcccgcaccgtgtgcattacgacctcaaatacgca
cttcgactctgtgctgagcatggtcaccaccgcgcttgtgttcacgtctataaggtgctg
gagctgtatgaagaagccgtggacctggccctgcaggtggatgtggacctggccaagcag
tgcgcagacttgcccgaggaggatgaggagctgcgcaagaagctgtggctgaagatcgct
cggcacgtggtgcaggaggaggaggatgtgcagacagctatggcctgcttggccagctgc
cccctgctcaagatcgaggacgtgctgcccttcttcccagacttcgtcaccatcgaccac
ttcaaggaggcgatctgcagctccctgaaggcctacaaccaccacatccaggagctgcag
cgggagatggaggaggccacagccagtgcccagcggatccgccgagacttgcaggagctg
cggggacgctacggcactgtggagcctcaggacaagtgctccacctgtgacttccctctg
ctcaaccgacccttttacgtgttcctctgtggccacatgttccacgccgactgtctcctg
caggccgtgaggcctggccttcctgcctacaagcaggccaagcttgaggagctgcagcgc
aagcttggggctgcccctcctcccaccaaaggctcggccaaggccaaagaggccgaagct
ggggcttcagccggggggcccagccgggagcagctcaaggctgacctggacgaactggtg
gctgcagagtgtgtgtactgtggggaactgatgatccgctccattgaccggcccttcatt
gacccccagcactatgaggaggaacaccgcagctggctgtag
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