Arvicola amphibius (Eurasian water vole): 119814773
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Entry
119814773 CDS
T08327
Symbol
Vps39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp04140
Autophagy - animal
aamp04148
Efferocytosis
aamp05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
119814773 (Vps39)
04148 Efferocytosis
119814773 (Vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
119814773 (Vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
aamp04131
]
119814773 (Vps39)
Membrane trafficking [BR:
aamp04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
119814773 (Vps39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
Beta-prop_RIG_2nd
Lgl_C
SAM_CEP-1_C
DUF4145
Motif
Other DBs
NCBI-GeneID:
119814773
NCBI-ProteinID:
XP_038186745
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All DBs
Position
5:55309742..55349020
Genome browser
AA seq
875 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDAGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQHTETGE
EVLRMCVAVRKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSLCVGFKRDYYLIRVD
GKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCALNWTDIPVAME
HQPPYIVAVLPRYVEIRTLEPRLLVQSIELQRPRFITSGGSNIIYVASNHFVWRLIPVPM
ATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPTLSGAELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
HLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRERVLNFLIENFKGLAIPYLEHIIHVW
EETGSRFHNCLIQLYCEKVQSLMKDYLLSLPTGKNPVPAGEEMGELGEYRQKLLMFLEIS
SYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHVLKDTKMAKEYCHKHYDQNK
EGNKDVYLSLLRMYLSPPSIHCLGPIKLELLEPQANLQAALQVLELHHSKLDTTKAINLL
PANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
CMVCKKKIGNSAFARYPNGVVVHYFCSKEVNAADT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgcttttgagccggtgccgatcctggaaaagcttcccctgcagatcgactgc
ctggctgcctgggaggaatggcttcttgttggaaccaaacaaggacatcttcttctctac
aggattcggaaggatgctggttgtaacaggtttgaggtaacactagagaagtccaataag
aacttttccaaaaagatccagcagatccatgtggtttcccagtttaagattctagtcagc
ttgttagaaaacaacatttatgtccatgacttgctgacatttcaacaaatcactactgtt
tcaaaggccaaaggggcatcgttgttcacctgtgacctccaacacaccgagaccggcgag
gaggtgctgcggatgtgtgtggcagtgaggaagaagctgcagctctacttctggaaggac
agggagttccatgaactgcagggggactttagtgttcctgatgtgcccaagtccatggcg
tggtgtgaaaattctctctgtgttggcttcaagagagactactacctgatcagggtggat
ggaaaggggtccatcaaagagctcttcccaacaggaaagcagctggagcccttagttgcg
cctctggcagatggcaaagtagctgtgggtcaggatgatctcaccgtggtgctcaacgag
gaaggcatctgcacacagaaatgcgcgctgaactggacagacatcccagtggccatggag
caccagcccccgtacattgtggcagtgttgccccggtacgtggagatccgaacgctcgag
ccaaggctcctggttcagagcattgagttgcaaaggccccgcttcattacctcaggggga
tcaaacattatctatgtggccagcaatcattttgtttggagactcattcctgttcccatg
gcaacccaaatccaacagcttctccaggacaagcagtttgaactggctctacagcttgca
gaaatgaaagatgactcagacagtgaaaagcagcagcaaatccatcacatcaagaacttg
tacgccttcaacctcttctgccagaagcgctttgatgagtccatgcaggtcttcgctaaa
cttggcacagatcccacccacgtgatgggcttgtaccctgacctgctacccacagactac
aggaagcagctgcagtaccccaacccgctgcccacgctctctggtgctgaactggagaag
gctcatttagctctcattgattacctaacacagaaacgaagccagctggtaaagaagctg
aatgactcggatcaccagtccagcacctccccactcatggaaggcacccccaccatcaag
tccaagaagaaattactacagatcatcgacaccaccctgctcaagtgctacctccataca
aacgtggccctggtggctcccttgctgcgtctggagaacaaccactgtcacattgaggaa
agcgagcacgtgctgaagaaggctcacaagtacagtgagctgatcatcctgtatgagaag
aaggggctccatgagaaagctctgcaggtgctggtggaccagtcaaagaaagcaaactca
cctctgaaaggccatgagaggacggtgcagtatctgcagcacttgggcactgaaaaccta
catttgattttttcctactcggtctgggtgctgagagacttcccagaagatggcctgaag
atattcactgaagacctcccggaggtggagtctctgccacgagagcgagtgctcaacttc
ttgatagagaatttcaagggtctggctattccttatctggagcacatcatccacgtgtgg
gaagaaacaggctcacggttccacaactgcctgatccagctgtactgtgagaaagtccag
agtctgatgaaagactaccttctgtccctgcccacaggcaaaaatcctgtccccgctgga
gaggaaatgggcgagctgggagaataccgacagaagctgctcatgttcttggagatttcc
agctactatgacccaggccggctcatctgtgattttccctttgatggcctcttagaagaa
agagctctcctgttggggcgcatggggaagcacgagcaagctctcttcatctacgtccac
gtcttgaaggacacgaagatggctaaggagtactgccacaaacactatgaccaaaacaaa
gaaggcaacaaagacgtgtatctgtctctgcttcggatgtacctgtcaccccccagcatt
cactgcctggggccaatcaaactggagctactggagccacaggcaaacctccaagccgcc
ctgcaggtcctagagctgcaccacagcaagttagacaccaccaaggccatcaaccttcta
ccagcaaacactcaaatcaatgacatacgcatctttctagaaaaggtcttggaagaaaat
gcacaaaagaaacggttcaatcaagtgctcaagaaccttctccatgctgagttcctgagg
gttcaggaagagcggattttacaccagcaggtgaagtgcatcatcaccgaggagaaggtg
tgcatggtgtgcaagaagaagattgggaacagtgcatttgcgaggtacccaaatggagtg
gttgtgcactacttctgttccaaagaagtcaacgcagccgacacctga
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