Arvicola amphibius (Eurasian water vole): 119815019
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Entry
119815019 CDS
T08327
Symbol
Nup54
Name
(RefSeq) nucleoporin p54 isoform X1
KO
K14308
nuclear pore complex protein Nup54
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03013
Nucleocytoplasmic transport
aamp05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119815019 (Nup54)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
119815019 (Nup54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamp03019
]
119815019 (Nup54)
Messenger RNA biogenesis [BR:
aamp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
119815019 (Nup54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
XhlA
Motif
Other DBs
NCBI-GeneID:
119815019
NCBI-ProteinID:
XP_038187081
LinkDB
All DBs
Position
1:13172397..13190637
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AA seq
509 aa
AA seq
DB search
MAFNFGAPSGTSGTSAATAAPAGGFGGFGTTTTTAGSAFSFSAPTNTGSTGLLGGTQNKG
FGFGTGFGTATGTGTGLGTGLGTGLGFGGFNTQPQQQQQTTLGGLFSQPAQAPAQSNQLI
NTASALSAPTLLGDERDAILAKWNQLQAFWGTGKGYFNNNIPPVEFTQENPFCRFKAVGY
SCMPNNKDEDGLVVLVFNKKEADIRSQQQQLVESLHKVLGGNQTLTVNVEGIKTLPDDQT
EVVIYVVERSPNGTSRRVPATTLYAHFEQANIKTQLQQLGVTLSMTRTELSPAQIKQLLQ
NPPAGVDPIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIISEDI
SELQKNQTTTMAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSGYAIQADEEQLRVQLDTIQ
GELNAPTQFKGRLNELMSQIRMQNHFGAVKSEERYYIDADLLREIKQHLKQQQEGLSHLI
SIIKDDLEDIKLVEHGLNETIHSRGGVFS
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atggctttcaattttggggctccatcgggcacgtctggcacctctgcagctaccgcggca
cccgcgggtgggtttggaggatttggaacaacaactacaactgcaggctctgcattcagc
ttctctgccccaacaaacacgggcagtacaggccttctcggtggcactcagaacaaaggt
tttggcttcggtactggttttggcacagcaacgggaactggtaccggtttgggtactggt
ttgggaaccggcctggggtttggaggatttaatacgcagccgcagcagcaacagcaaact
actttaggtggtctcttcagtcagcctgcacaggctcctgcccagtccaaccagctcatc
aacactgccagtgcactttctgctccaacattgctgggggatgagagagatgccattttg
gcaaaatggaaccagcttcaggctttctggggaacaggaaaaggatatttcaacaataac
attcctcccgtggagtttacacaagaaaatcccttttgccgatttaaggctgtaggttat
agttgtatgcccaataataaagatgaagatggactggtggttttagttttcaacaagaaa
gaagcagacattagaagccagcagcagcagctagtagaatcattgcataaggttttggga
ggaaaccagaccctgactgtcaatgtggagggcattaagaccctgccagatgatcagaca
gaagttgtcatttatgttgttgagcgttctccaaatggcacctcgagaagagtcccagcg
acaacactgtatgcccactttgaacaagccaacattaaaacacagctgcagcagctcggg
gtgacgctgtctatgaccagaacagagctgtcccctgctcagatcaaacagctcctgcag
aaccctcctgctggtgttgatcctattatttgggaacaagccaaggtggataaccccgat
tctgaaaaattaattcctgtacccatggtgggtttcaaagagctgcttcgaagactgaag
gttcaagaccagatgactaagcagcatcagaccagattagatatcatatctgaagatatt
agtgagctacaaaagaatcaaactaccactatggccaagatagcacagtacaagcggaag
ctcatggatctctcccacagaaccttacaggtcctaatcaaacaggagattcaaaggaag
agcggctatgcgatccaggctgatgaggagcagctgcgggttcagctggacactattcag
ggcgagctgaatgcccctactcagttcaaaggtcgactaaatgaactgatgtcccagatc
aggatgcagaatcactttggagctgtgaagtctgaagagaggtattacatagatgcggac
ctcttgcgagaaatcaagcagcatttgaaacaacaacaggaaggccttagccacttgatt
agcatcataaaagatgacctagaagatataaaactggtagagcatggattgaatgaaacc
atccatagcagaggcggtgtctttagctga
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