Arvicola amphibius (Eurasian water vole): 119815068
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Entry
119815068 CDS
T08327
Symbol
Ythdc2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aamp03041
]
119815068 (Ythdc2)
Enzymes [BR:
aamp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119815068 (Ythdc2)
Spliceosome [BR:
aamp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
119815068 (Ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
Helicase_C
HA2_C
R3H
RNA_hel_CTD
DEAD
Ank_2
WHD_HA2
AAA_19
nSTAND3
Ank
AAA_22
ATPase
PhoH
AAA_7
UvrD-helicase
nSTAND_NTPase5
AAA_16
AAA_29
Ank_4
ABC_tran
T2SSE
SRP54
Motif
Other DBs
NCBI-GeneID:
119815068
NCBI-ProteinID:
XP_038187172
LinkDB
All DBs
Position
5:121287596..121352640
Genome browser
AA seq
1434 aa
AA seq
DB search
MSRPSSVSPRPPAPGGGGSGGGGGGPASCGPGGGGRAKGLKDIRIDEEVKIAVNIALERF
RYGDQREMEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGANRYLTVKKKDGSETAHAMMT
CNLTHNTKHAVRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQ
VPVKRGESEFDAFRQSLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCFK
NGIPCRIFCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNGVL
LRTLMAGDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAALDVNLF
IRYFGSCPVIYIQGRPFEVKEMFLEDILRTTGYTNKEMLKYKKEKQREEKQQTTLTEWYS
AQENSFKPESQRQRAVASVSEEYDLLDDGGDAVFSQLTEKDVNCLEPWLIKEMDACLSDI
WLHKDVDAFAQVFHLILTENVSVDYRHSETSATALMVAAGRGFTSQVEQLISMGANVHSK
ASNGWMALDWAKHFGQTEIVDLLESYSASLEFGNLDESSLVQTNGNDLSAEDRELLKAYH
HSFDDEKVDLDLIMHLLYNICHSCDAGAILIFLPGYDEIVGLRDRILFDDKRFADNTHRY
QVFMLHSNMQTSDQKKVLKNPPAGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDA
LNFVTMLKMVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQEL
CLHTKLLAPVNCTIADFLMKAPEPPPALIVRNAVQMLKTIDAMDAWEDLTELGYHLADLP
VEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFSD
HMALLRAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGG
DIRDVNTNSENWAVVKAALVAGMYPNLVHVDRENVVLTGPKEKKVRFHPTSVLSQPQYKK
IPPANGQAAAIQALPTDWLIYDEMTRAHRIANIRCCSAVTPVTVLVFCGPARLASNALQE
PSSFRADGIPNDSSDSEMEDRTTANLAALKLDEWLNFKLEPEAASLLLQLRQKWHSLFLR
RMRAPSKPWSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLASSWRSN
NSRKSSADTEFADGSTTAERVLMKSPSPALHPPQKYKDRGILHPKRSTDDRSDQSSVKST
DSSSYPSPCASPSPPSSGKGSKSPSPRPNMPVRYFIMKSSNLRNLEISQQKGIWSTTPSN
ERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGLGGVFKVEWIRK
ESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLPLGEKTTAD
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggccgagcagcgtctcgccgcgtcctccggctcctggcggaggcggcagcgga
ggaggcggcggcggccccgcttcgtgtggtcctggaggcggcggccgggccaaggggctc
aaagacattcgtatcgacgaggaggtgaagatcgccgtcaacatcgccctggagcgcttc
cgatatggtgaccagcgagaaatggaatttccttcttctttgaccagtacggaaagagcc
tttattcaccgactgagtcagtctcttggtttagtttctaaaagtaaaggaaagggagca
aacaggtacctaactgtgaagaagaaagatggatcagaaacagcacatgcaatgatgacc
tgtaatttgactcacaatacaaaacatgctgttagaagcctaattcagagatttcctgtc
actaataaagagcgtactgaactcctacctaaaacagaaagaggaaacgtgtttgcagtt
gaagctgaaaaccgagaaatgagcaagacaagtgggcgccttaacaatggcatacctcaa
gttcctgtgaaaaggggagagtccgaatttgatgctttcaggcagtctttaccagttttt
gagaaacaagaagaaattgttaaaataataaaagagaataaagtagttttgattgtagga
gaaactgggtctggaaagactacacagattcctcagttcctattagatgattgctttaag
aacggcattccctgccgaatattttgtactcagccaagacgattagcagctattgctgtg
gctgaaagagttgctgccgagagaagggaaagaattggtcaaacaattggttatcagatc
cgattagaaagcagggtttctccaaagacacttttgacattttgcactaacggggtattg
cttcgtacattgatggcaggtgatagtacgttgtcaactgtgacccatgtcattgtggat
gaagtgcatgaaagggatcggttcagtgattttttacttacaaaattaagagatttgttg
caaaaacacccaactttgaaactaattctttctagtgctgccttggatgtgaatctcttc
ataagatattttggaagttgtccagtgatatacatacagggaagaccatttgaagtaaaa
gaaatgtttctggaagatattttaagaactactggatataccaacaaagaaatgttaaag
tacaaaaaggaaaagcaacgagaagagaaacagcagaccacactcacagagtggtactca
gctcaagagaattctttcaagcctgagtctcagagacagagagctgttgcaagtgtttct
gaagagtatgatttattggatgatggaggtgatgctgtctttagtcagctgacagaaaaa
gatgtgaattgccttgaaccatggttaatcaaagaaatggatgcttgcctttctgacata
tggctacataaagatgttgatgcttttgctcaggtctttcatcttattttaactgaaaat
gttagtgttgattacaggcatagtgagaccagtgccacagctctgatggttgccgcggga
cggggttttacgagtcaagtagaacagttaattagtatgggagccaatgtccacagtaaa
gcatcaaatggctggatggctttagattgggctaagcactttggacaaactgaaattgtg
gatcttctagaatcttacagtgcttcattggaatttggaaatctagatgaaagttctttg
gttcaaacaaatggaaatgacctcagtgcagaagacagagagctgttgaaagcttaccat
catagttttgatgatgaaaaggtagacttggatttgatcatgcatcttctatacaatatc
tgtcatagttgtgatgctggtgcaatattaatttttctacctggatatgatgaaattgtt
ggtttgagggatcgtatcctgtttgatgacaagcggtttgctgacaatacacatagatat
caagtctttatgctccattcaaatatgcagacatctgatcaaaagaaggtattaaaaaat
ccacctgcaggtgttcgaaaaataatcctttccaccaatattgctgaaacaagcatcact
gtcaatgacgttgtctttgttattgattctggtaaggtgaaggagaaatcctttgatgca
ctgaattttgttacaatgttaaaaatggtgtggatttccaaagctagtgccatacagcgc
aaaggcagagctggacgatgtagacctggaatttgtttccgtctgtttagtagactccga
tttcagaacatgctggaatttcagactccagagctcttgagaatgcctttgcaggaactt
tgtttacatactaagttgttagccccagttaattgtaccattgctgacttccttatgaaa
gcccctgaaccgcctccagctttaattgtaagaaatgctgttcagatgcttaagacaata
gatgcaatggatgcatgggaagatctgactgagcttgggtatcatttggctgatttgcca
gtagagccacacctcggtaaaatggtcctgtgtgctgttgttttaaagtgtctggacccc
atcctaacaattgcctgcacgctagcttatcgcgacccttttgtactgcctactcaggcc
tctcaaaagcgtgcagctatgctttgtaggaaacgtttcactgcagggaccttcagtgac
cacatggcacttctcagagcattccaggcatggcagaaagcacgaagtgatggctgggag
cgagctttttgtgaaaagaattttctctcgcaagctactatggaaatcattataggcatg
agaacacagttgcttggtcagcttagagcatcaggttttgttagagcacgaggtggtggt
gatattcgagatgttaacacaaactccgagaactgggccgttgttaaagctgcattggta
gcaggcatgtatcctaatttagtccatgtggacagagagaatgtagtattgacagggcca
aaggaaaaaaaagtacgatttcatcccacttcagttctcagtcagccccagtataaaaag
attcctccagccaatggtcaggctgcagcaattcaggcattgcccacagattggcttatt
tatgatgaaatgaccagagcccatagaattgctaatatcaggtgttgttcagcagtgaca
cctgttactgtcctggtgttctgtggaccagcaaggctggcaagtaatgctcttcaggag
ccttcatcctttagagcggatggcattcccaatgatagtagtgacagtgaaatggaggac
agaaccactgctaatctggctgctttgaaacttgatgagtggcttaatttcaaactagag
ccagaggctgccagtttattgctgcagctcagacagaaatggcatagcttgtttttacgc
cgaatgagagctccatctaaaccttggtctcaagtcgatgaagctactatacgagcaatt
atagctgttttaagcactgaagaacagtctgcaggtttacagcaaccgtctggaattggc
cagaggccaagacccatgtcttcagaagaacttcctttggcttcctcttggagatccaat
aacagtaggaaaagttcagctgacaccgagtttgctgatggatccactactgcagaaaga
gtactgatgaaatctccatctccagccttacatccacctcagaagtacaaagacagagga
attttacatcctaaacggagcactgatgaccgatcagatcaatcatctgtgaaatctaca
gacagcagcagttacccaagtccttgtgctagtccctctcctccatcctcagggaagggc
tcaaaatctccttcaccaagaccaaatatgcctgttcgttacttcataatgaagagtagc
aatctgagaaacctggaaatttctcaacagaagggtatctggtctacaactcctagtaat
gagcggaagctaaatcgagccttttgggagagcagcatggtttatttggtattttctgtt
caaggatctggacatttccagggattttctaggatgtcttctgagataggaagagagaag
agccaggactggggttcagctgggctaggtggagtatttaaagtagagtggatacgtaaa
gaaagcctgccctttcagtttgcacaccatttgctcaatccttggaatgacaacaagaaa
gtgcagataagcagagatgggcaggagctagaacctcaggttggtgaacagttgctccag
ttatgggaacgtcttccattgggagagaaaacgacagctgattga
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integrated database retrieval system
