Arvicola amphibius (Eurasian water vole): 119815847
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Entry
119815847 CDS
T08327
Symbol
Rbm39
Name
(RefSeq) RNA-binding protein 39 isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aamp03041
]
119815847 (Rbm39)
Spliceosome [BR:
aamp03041
]
Common components
Common spliceosomal components
General mRNP proteins
119815847 (Rbm39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RBD_DEAH11
RRM_7
POP1_C
IHO1
Motif
Other DBs
NCBI-GeneID:
119815847
NCBI-ProteinID:
XP_038188083
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All DBs
Position
5:22140301..22175874
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AA seq
530 aa
AA seq
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MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRD
RERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKL
SRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVR
DVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMAN
NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD
SECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLM
ARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQP
LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPS
IAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgatattgatattgaagcaatgcttgaggccccttacaagaaggatgagaac
aagttgagcagtgctaacggccacgaagaacgtagcaaaaagagaaaaaaaagcaagagc
cgaagtcgtagtcatgagcgaaagagaagcaaaagtaaggaacgcaagcgaagtagagat
agagaaaggaaaaagagcaaaagccgtgaacgaaagcgaagtagaagcaaagaaaggaga
cgaagccgctcacgaagtcgagatagaagattccgaggccgctacagaagtccctactcc
ggaccaaaatttaacagtgccatccgaggaaagattgggttgcctcatagcatcaaatta
agcagaagacgttcccgaagcaaaagtccattcagaaaagacaagagccctgtgagggaa
cctattgataacctaactcctgaggagagggatgcaaggacagttttctgcatgcagctg
gcagcaagaattcgaccaagggatttggaagagtttttctctacagtaggaaaggttcga
gatgtaaggatgatttctgatagaaattcaagacgttccaaaggaattgcctatgtggaa
tttgttgatgttagctcagtgcctctagcaattggattaactggccaacgtgttttagga
gtgccaattatagtacaggcatcacaggcagaaaaaaatcgagctgctgcaatggctaac
aatttacaaaagggaagtgctggacctatgaggctttatgtgggatcattacactttaac
ataactgaagatatgcttcgggggatctttgagccttttggaaggattgaaagtattcaa
ctcatgatggatagtgaaacaggtcgatctaagggatatggattcattacattttctgat
tcagaatgtgccaaaaaagctttggaacagcttaatggatttgaactggctgggagacca
atgaaagttggtcacgttactgaacgaactgatgcttctagtgctagttcatttctggac
agtgatgaacttgaaaggactggaattgatttgggaacaactggtcgtctccaattaatg
gctagacttgcagaaggtacaggtttgcagattccaccagcagcacagcaagcattacaa
atgagtggctctttggcatttggtgctgtggcagaattctcttttgttatagatttgcaa
acacgactttcccaacagactgaagcctcagctttagctgcagctgcatctgttcaacca
cttgcaacacagtgtttccaactttctaatatgtttaaccctcaaacagaagaagaagtt
ggatgggatacagagattaaagatgatgtgattgaagaatgtaataaacatggaggagtt
attcatatttatgttgacaaaaattcagctcagggcaatgtgtatgtgaagtgcccatct
attgctgcagctattgctgctgtcaatgcattgcatggcaggtggtttgctggtaaaatg
ataacagcagcgtatgtacctcttccaacttatcacaacctctttcctgattctatgaca
gcaacacaactactggttccaagtagacgatga
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