Arvicola amphibius (Eurasian water vole): 119816446
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Entry
119816446 CDS
T08327
Symbol
Whrn
Name
(RefSeq) whirlin isoform X1
KO
K21879
whirlin
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
aamp03037
]
119816446 (Whrn)
Cilium and associated proteins [BR:
aamp03037
]
Primary cilia and associated proteins
USH complex and associated proteins
119816446 (Whrn)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
HHD_RTEL1
USH1C_N
PAH_ZNF598
Motif
Other DBs
NCBI-GeneID:
119816446
NCBI-ProteinID:
XP_038189026
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All DBs
Position
6:82869846..82957171
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AA seq
917 aa
AA seq
DB search
MNGQLDGLSVSSSSTGSLGSAAAAGGGGGAGLRLLSANVRQLHQALTALLSEPEREQFTH
CLNAYHARRNVFDLVRTLRVLLDSPVKRRLLPMLRLVIPRSDQLLFDQYTAEGLYLPATT
PYRQPAWAAPDGAEPGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKE
GLRVGDQILRVNDKSLSRVTHAEAVKALKGSKKLVLSVYSAGRIPGGYVTNHIYTWVDPQ
GRSTSPPSSLPQPHGSALRQHENDRRSALHLLQEGDEKKVNLVLGDGRSLGLTIRGGAEY
GLGIYITGVDPGSEAEISGLKVGDQILEVNGRSFLSILHDEAVKLLKSSRHLILTVKDVG
RLPHARTTVDQTKWIASSRIGESTTSSAGFPGDLREEGTNKPGFYKGPAGSQVTLSSLGN
QTRALLDDQARHLLTEPERATMMYYLDQYRGGAISVEALVMALFELLNTHAKFSLLSEVR
SIILPQDLDLFDHLVLRREIESMKARQPPGPGAGDTYSMVSYSDTGSSTGSHGTSTTVSS
ARERLLWLIDLMENTLDLEGNGETTQGSANTLPDVSVDDVNPPSEDLSGIKPPPPPPPLA
QDHDHRLDQTQKPGREDPTPLSSAGRSGIVFSAPQNRSPPLGPAPSLGPSSAQDSPTSPI
YASISHANPRSRKPLDTHLALVNQHPIGPFPRVQSPPHLKSPPAETQGAGACLPSSSSSD
HPAPVGANQHFVLVEVHRPDSEPDVNEVRALPQTRTTSTLSQLSDSGQTLSEDSGVDAGE
TEASTSGRGRQAAATRSKSGKELPRTERTTEGANKPPGLLEPTSTLVRVRKSAATLGIAI
EGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLALRGKEHREAARIIAEAFKT
KERDYIDFLVTEFNVML
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgaacgggcagctggacggtctgtcggtgagctcgtcctccaccggctcgctggggtcg
gcggccgcggcgggaggcggcgggggcgcagggctgcggctgctgtctgccaacgtgcgc
cagttgcaccaggcgctcacggcgctgctgagcgagcccgagcgggagcagttcactcat
tgcctcaacgcgtaccacgcgcgccgcaacgtcttcgacctggtgcgcaccctgcgcgtc
ctgctggacagcccggtcaagcgacgtctgctgcccatgctgcgactggtcatcccgcgc
tccgaccagctgctcttcgaccagtacactgccgagggtctctacctgccagccaccacc
ccctataggcagcctgcctgggccgctcccgacggcgcggagcccggggaggtgcggctc
gtgagcctgcggcgcgccaaggcccacgagggcttgggcttcagcatacgtgggggctcg
gaacacggtgtgggcatctacgtgtcactagtggagccgggctccctggctgagaaggaa
gggttgcgggtcggggaccagattctgcgcgtcaacgataaatctctatcccgcgtgacc
cacgcggaggctgtcaaggctctcaagggctccaagaagctagtgctgtctgtgtactca
gctgggcgtatccctgggggctatgtcaccaaccacatctacacctgggtggacccacag
ggtcgcagcacctctcctccctccagcctgccccagccacatggcagcgccctgagacaa
catgagaatgaccgaaggagtgccctacacctccttcaggaaggagatgagaaaaaggtg
aacctggtgctgggggacggccggtccctgggcctcacaatccgaggtggagctgagtac
ggccttggcatttacatcactggcgtggacccgggctcagaagcagaaatcagtgggctc
aaggttggggaccagattctggaggtgaatgggcggagctttctcagcatcttgcatgac
gaggcggtgaagctgctcaagtcatcacggcacctcatcctgacggtgaaggacgttgga
aggctgccccacgcacgtaccaccgtggaccagaccaagtggattgccagttcccggatt
ggggaaagcaccaccagctcagcagggtttccaggggacctcagagaggaaggaacaaac
aagccaggattttacaaaggcccagctggctcccaggtgaccctgagcagcctggggaat
cagacacgtgcacttctggatgaccaagctcgacatctgctgacggagccggagcgtgcc
accatgatgtactacctggaccagtaccgtggtggtgccatctctgtggaggccctggtc
atggcactgtttgaattgctcaacacacatgccaagttctctctcctgtctgaggtgagg
agcatcatcttgccccaagacctggacctctttgaccacctggtgctgaggcgagagata
gagtccatgaaggcccggcagcccccaggccctggtgctggagacacctactccatggta
tcctacagtgacacgggttcatccacaggcagccatggcacctccacaactgtcagctca
gccagggagcggctgctgtggcttatagacctgatggagaacacgttagacctggaggga
aacggcgagaccacccaaggcagcgctaacaccctgccggatgtgtctgtggacgatgtc
aaccccccctcagaagatctgtctggcatcaagccacctcctcccccaccaccattagct
caagatcacgaccaccgacttgaccaaacacagaagccgggaagggaggaccctacacct
ctgtcttctgctggccgctcaggcattgtcttctcagcaccgcagaatcgaagcccacca
ctgggccctgcaccctccctggggccctcctcagcacaggactcacccacctctcccatt
tatgcttccatctcccatgccaaccccaggtctaggaagccgctggacacccacctggcc
ctggttaaccagcatcccattggccccttccctcgggtccagtccccaccgcacctgaag
agccctcctgcagagacccaaggggcgggggcctgcctcccgtcatcatcgtcctctgat
caccctgcccctgtgggcgcaaaccagcactttgtcttggtggaggtgcaccgtccggat
agcgagcctgacgtgaatgaagtccgggctctgccccagacacgcacaacctccactctc
tctcagctctcagacagtgggcagactctaagtgaggacagtggcgtggatgctggggag
acagaggccagcacctcaggccgaggcagacaggcagcagccactaggagcaagagtggc
aaggaactgccccggacggagaggaccacagagggtgccaataaaccccctggcctcctg
gagccaacatccactctagtccgtgtgaggaaaagtgcagccactctgggcatcgccatt
gagggtggtgccaacacacgccagcctctgcccaggattgtcacgattcagcgaggaggt
tctgcccataactgtgggcagctgaaggtgggccacgtgattctggaagtgaacgggctg
gcactgcggggtaaggagcacagagaggcggcccgcatcatcgccgaggccttcaagacc
aaggagagagactatattgactttctggtcaccgagttcaacgtgatgctctag
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