Arvicola amphibius (Eurasian water vole): 119816600
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Entry
119816600 CDS
T08327
Symbol
Thoc3
Name
(RefSeq) THO complex subunit 3
KO
K12880
THO complex subunit 3
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03013
Nucleocytoplasmic transport
aamp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119816600 (Thoc3)
09122 Translation
03013 Nucleocytoplasmic transport
119816600 (Thoc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamp03019
]
119816600 (Thoc3)
03041 Spliceosome [BR:
aamp03041
]
119816600 (Thoc3)
Messenger RNA biogenesis [BR:
aamp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
119816600 (Thoc3)
Spliceosome [BR:
aamp03041
]
Complex C
Other components
EJC/TREX
119816600 (Thoc3)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
119816600 (Thoc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40_CDC20-Fz
WD40
Beta-prop_EML_2
Beta-prop_WDR3_1st
WD40_Prp19
WD40_WDHD1_1st
ANAPC4_WD40
WDR55
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_Aladin
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR19_1st
WD40_Gbeta
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_IFT140_1st
eIF2A
Beta-prop_EML
Beta-prop_Vps41
Beta-prop_IFT122_1st
Beta-prop_WDR36-Utp21_1st
WD40_RFWD3
Beta-prop_TEP1_C
Beta-prop_WDR35_TULP_N
WD40_MABP1-WDR62_1st
RMC1_N
Beta-prop_HPS5
NBCH_WD40
WDR90_beta-prop_4th
Tricorn_2nd
Beta-prop_EIPR1
B-prop_COPA_B_2nd
Beta-prop_ACSF4
PD40
Beta-prop_WDR75_1st
Beta-prop_NUP159_NUP214
Beta-prop_SPT8
Beta-prop_WDR41
Beta-prop_Nup120_160
Beta-prop_NWD2_C
Peptidase_S9_N
Cytochrom_D1
Beta-prop_WDR11_1st
DPPIV_N
Beta-prop_ELP1_1st
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
119816600
NCBI-ProteinID:
XP_038189299
LinkDB
All DBs
Position
6:complement(150729627..150737803)
Genome browser
AA seq
351 aa
AA seq
DB search
MAVPTSILGPPPPPQTGPGSMVAWCSMSSGPSRYVLGMQELFRGHSKTREFPAHSAKVHS
VAWSCDGRRLASGSFDKTASVFLLEKDRLVKENNYRGHGDSVDQLCWHPSNPDLFVTASG
DKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVVTFIDAKTHRSKAEEQ
FKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPSNCICIKFDPMGKYFA
TGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASASEDHFIDIAEVETGDK
LWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLFGLPNDS
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
atggctgtacccacgtcgattctcgggcccccgccacccccccaaaccggtcccggttcg
atggtggcctggtgctctatgagcagtggcccgtctcgttatgtgcttgggatgcaggaa
ctgttccgaggccacagcaagacgcgcgagttcccggcgcacagtgccaaggtgcattcg
gtggcctggagctgcgacggtcgtcgcttggcctcggggtccttcgacaagactgctagc
gtgttcttgctggagaaggaccgactggtcaaagaaaacaactaccggggacatggagat
agtgtggatcagctttgctggcatccaagcaaccctgacctctttgtcacggcatctgga
gataaaaccattcgcatctgggatgtgaggaccacaaaatgcattgccaccgtgaacacc
aaaggggagaacattaatatctgctggagtcccgatgggcagaccattgctgtgggcaac
aaggatgacgttgtgacctttattgatgccaagacgcaccgttccaaagcagaagagcag
tttaaatttgaggtcaacgagatctcctggaataacgataataacatgttcttcctgacc
aatggcaatggctgtatcaacattctcagctaccctgaactaaagcctgtgcagtccatc
aatgcccatccttctaactgcatctgcatcaagtttgaccccatggggaaatacttcgcc
acaggaagtgcagacgccttggtcagcctctgggatgtcgatgagttagtgtgcgtgcgg
tgcttctccaggttggattggccggtgaggaccctgagttttagccatgatgggaagatg
ctggcgtcggcctccgaggaccatttcattgacatagctgaagtggagacaggggacaag
ctgtgggaggtgcagtgtgagtccccgactttcaccgtggcttggcaccccaagaggcct
ctgctggcctttgcctgtgatgacaaagatggcaaatatgacagcagtcgggaagctggc
actgtgaagctgtttgggctcccgaatgactcctga
DBGET
integrated database retrieval system
