Arvicola amphibius (Eurasian water vole): 119817228
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Entry
119817228 CDS
T08327
Name
(RefSeq) eukaryotic initiation factor 4A-III-like
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03013
Nucleocytoplasmic transport
aamp03015
mRNA surveillance pathway
aamp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119817228
09122 Translation
03013 Nucleocytoplasmic transport
119817228
03015 mRNA surveillance pathway
119817228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamp03019
]
119817228
03041 Spliceosome [BR:
aamp03041
]
119817228
03009 Ribosome biogenesis [BR:
aamp03009
]
119817228
03012 Translation factors [BR:
aamp03012
]
119817228
Enzymes [BR:
aamp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119817228
Messenger RNA biogenesis [BR:
aamp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
119817228
mRNA cycle factors
Stress granule specific factors
119817228
Spliceosome [BR:
aamp03041
]
Complex C
Other components
EJC/TREX
119817228
Ribosome biogenesis [BR:
aamp03009
]
Eukaryotic type
90S particles
Helicases
119817228
Translation factors [BR:
aamp03012
]
Eukaryotic type
Initiation factors
eIF-4
119817228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_22
AAA_30
TniB
Motif
Other DBs
NCBI-GeneID:
119817228
NCBI-ProteinID:
XP_038190335
LinkDB
All DBs
Position
6:complement(34068995..34072215)
Genome browser
AA seq
500 aa
AA seq
DB search
MYAVRSTCEWAGGPGPGFKHITVSLMVGLSSYFLIEGQNTLSRLEPSSSQSHTHSPGQED
LFLQGPKVLRSDLSGRCRSRSSPLGGLQIRAATATMAMLASGRKWLLKEEDVNKVEFETS
EEVDVTPTFDTVGLREDLLRGIYAYGFEKPSAIQQRALKQIIKGRDVIAQSQSGTGKTAT
FSISVLQGLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIR
KLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNRGFKEQIYDVYRFLPPA
TQVVLVSATLPHEILEMTNKFMTDPICILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL
YDTLTVTQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL
ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRIFRD
IEQYYSIQIDEMPMNVADLI
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgtatgcagtgagaagcacctgtgaatgggcaggaggtccagggcctggttttaagcac
atcacagtctcgctaatggttggtttgtcatcttacttcctcatagaaggtcagaacacc
ctttctagactggaacccagcagctctcagtcccatacccacagccctgggcaagaggat
ctgttccttcagggccccaaggtcttgcggagcgacctgtcaggccgctgccgctcgcgc
tcctcacctctcggtggactccaaatcagggccgccacggccacgatggcgatgttagcc
tctgggcggaagtggttgctcaaagaggaggacgtgaacaaagtggagtttgagaccagc
gaggaggtggacgtgacccccacgttcgacaccgtgggcctgcgggaggacctactgcgc
ggcatctacgcctacggttttgagaagccttcagcaatccagcagcgcgctctcaagcag
ataattaaggggagagatgtcatagcccagtctcagtctggcaccggcaagacggccacc
ttcagcatttcagtcctccagggcttggatatccaggttcgagaaacccaagctttgatc
ttggctccaacaagagagttagctgtacagattcagaagggtttgctggctctgggggac
tacatgaatgtacagtgccacgcctgcattgggggcaccaatgttggggaggacatccgc
aagctggactatgggcaacatgttgtggcaggcaccccgggacgcgtctttgatatgatt
cgccgtagaagtttaaggacacgggctatcaagatgttggttttggatgaggctgatgaa
atgttgaacagaggtttcaaggagcagatctacgatgtgtacaggttcctgccgccggcc
acacaggtggttctcgtcagtgccacattgcctcatgagatcctggagatgaccaacaag
tttatgaccgaccccatctgcatcttggtgaagcgtgatgaattgactctggaaggcatc
aagcagttcttcgtggcggtggaaagagaggagtggaaatttgacactctgtgtgacctc
tacgacacgctgaccgtcacccaggctgtcatcttctgcaacaccaagaggaaggttgac
tggctgacagagaagatgagagaagccaacttcactgtgtcatccatgcacggggacatg
ccccagaaggagcgcgagtccatcatgaaggagttccgctcaggtgccagccgagtgctc
atttctacagatgtctgggctcgcggcctggatgtccctcaggtgtccctcatcattaac
tacgacctgcccaacaacagagaactgtacattcacaggattgggagatcggggcgatac
ggccgcaaaggtgtggccatcaattttgtgaagaatgatgacatccgcatcttcagggac
atagaacagtactactccatccagatagacgagatgcccatgaacgtggctgacctgatc
tga
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