Arvicola amphibius (Eurasian water vole): 119817282
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Entry
119817282 CDS
T08327
Symbol
Frem1
Name
(RefSeq) FRAS1-related extracellular matrix protein 1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119817282 (Frem1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
aamp04091
]
119817282 (Frem1)
Lectins [BR:
aamp04091
]
C-Type lectins
Lecticans
119817282 (Frem1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Cadherin_4
Lectin_C
Calx-beta
Motif
Other DBs
NCBI-GeneID:
119817282
NCBI-ProteinID:
XP_041911243
LinkDB
All DBs
Position
6:63196890..63312041
Genome browser
AA seq
2226 aa
AA seq
DB search
MNSSGCTGPKVLLFLLLSLLLLHLDLANSTFVSINRGLRVMKGGSAFLSGDHLKFAIPKE
KDACRVEVVMNEPITQRVGKLTPQVFDCHFLPNEVQYAHNGCPILDEDTVKLRLYRFTET
DTFMETFLLRVHLVEPDCNIIRLSSSMLEVTEFYGLSQAIDKNLLQFDYDRKANLDCTIR
LDPVGTHLPAHGKLVTLNHKPEGPRGDQPHSFFSETRMYLFIVKLKLSVKLKCPGGSCAL
GLQEVGSLRASCEEFLMMGLRYQHTRPPSPNVDYIAIQLDLTDRRSKTTYKSESAWLPVN
IRVGIPNQAPRAAFMAMFVLEVDQFILTPLTTSVLDCEEDETPKPLLVFNITKAPPQGYV
THLLDHTRPISSFTWKDLSDMQVAYQPPNSSYPERRHYKLEVEVYDFFFERSAPITVHIS
IRTADTNAPRVSWNTGLNLLEGQSRAITWEQFQIVDNDDIGAVQLVTIGGLQHGQLTVRE
GKGFLFTVADLQAGVVRYHHDDSDSTKDFVAFRIFDGQHSSHHKFPINILPKDDSPPFLI
TNVVIELEEGQTVLIQGSMLRASDVDSSDDYIFFNITRFPQAGEIMKKPGPGLVGYPVPG
FLQRDLFSGIIYYRHFGGEIFGDSFEFVLWDSHEPPNLSGPQVVTIHISPVADQLPKEAP
GISRHLVVKETEVAYITKKHLHFLDTESQDGELVYTVTRPPCFFFSHRHLDAGKLFMVDS
IPKLTKNPTALGLRSFTQHAVNHMKVAYMPPMQDIGPTPRHVQFTVSVRNQRGGTLHGIC
FNITILPVDNQVPEVFTNTLRVAEGGQCTISTENILVSDVDTPLDSICLSLRKMPLHGRV
ELNGFPLNPRDTFSWKDLITLKVRYHHDGAEVFQDEIFLEVTDGTNSAEFVLHIEVFPVN
DEPPVLKADLIPMMHCSEGGEVTITPEYIFATDADSDDLKLLFLIAREPQHGVVRKAGIR
VDRFSQGDVISGAVTYKHTGGEIGLAPCFDTIMLVVSDGEAGPLVNDCCYNGPDPSAPLH
ESFPMYELNITVHPVDNQAPSVIIGRRLVVDEGFSGTLTTSHLTAADPDTAPDDLEFVLV
SHPQFGYLENTLPSAGFEKSNMGISIASFRWRDMKALHINYVQSRHLRVEPTADQFMVYA
TDGKARSLETTFHVIINPTNDEAPDFAVQNITVCEGQMTELDSSFITAADRDVPKDSLLF
SIPRKPQHGLLIHMAISKESPQIKQEIHNFSMDLLKAGMKLAYVHDDSESLTDSFVIQLS
DGKHIILKTISVAITPVNDEKPTLSKKAEISMAAGDTRVLSSAVLSAIDKDSPRETIHYL
FERLPQNGQLQLKIGRDWVPLSAGMQCTQEDVDLNLLRYTHTGKMDSQNGDSFAFYLWDG
DNRSPVFDCHIIIEDSRKGDIVIHAKPLVVAKGDRGFLSTATLLAVDGADKPEELLYLLT
SPPQYGQVEYVHYPGVPITSFSQMDIAGQTVCYIHKSRAAVPNDSFRFTISNGLQTRQGV
FEITLETADRALPVVTRNKGLRLAEGTVGLLSTEHLQLTDPDTPPDNLTFLLVQLPRHGN
LHLRGKVLLHNFTQQDVDSRDVAYQHSGGGSQADGFTFLATDRMNQGFVVDGKVRKQPVL
FTIQVDQLDKAAPRIIRLHSPSQVGLLKNGCYGIYITSHALKASDPDTEDDQIIFKILRG
PLHGRLENTTTGDFIHEQFSQKDLSSKTILYIINPSLQVNSDILEFQIMDPAGNTATPQS
LELKWSFIEWFQTEYEVCENVGLLPLEVTRRGYSMDSAFVGIEVNQVSAVVGKDFTVTPS
KLIQFDPGMSTKMWNIAITYDGLEEDDEVFEVILNSPVNAVLGTKTKAAVKILDSKGGRC
HPSDSFNQSKHSTWGKGSGQPLRPGSSSLTPAGSPHLERGPSPSLTKGDALQGFDPTDLS
QRKMRTHGNGKSVHPSSVCRNGTDTIYNYHGIVSLKLDSDGFSAHKRKAKLSIIRPPQKT
IQVAELPLADKVESTAGSHFPRQGQLPSFPKDCSVALKGLFHFEESTHRLYLCDGTTWKA
WSPQTKGLEDKSCPAGWHLHSGYCHTLVTQRKGTWTTATRVCREQYQGNLVTVFSRRHMQ
WLWDISGRKPFWIGLKNQARTGHWEWIGGEPFAFTNWKRGPPQHPKPGKNCVLVHKRGQW
QSKNCSKGKAHNFVCSRKLQIPHMSPSSSIAGAPTQSSHRVRVKLALHLQSARVECQDLV
RILKLF
NT seq
6681 nt
NT seq
+upstream
nt +downstream
nt
atgaactcttcaggttgtactgggcccaaagtcctgctgttcttactgctctcgctgctt
ctgctgcacctggacctggccaactccaccttcgtcagcatcaaccggggcctgcgggtg
atgaagggcggctctgccttcctgtctggagatcatctgaagtttgccatccccaaagag
aaggatgcctgtagagtggaggtagtgatgaatgaaccgataacccagagggttgggaaa
ctcacgccacaggtctttgattgccatttccttcccaacgaagtgcagtatgctcacaat
ggatgcccaattcttgatgaagatactgtgaagcttagactgtatagatttactgaaaca
gacaccttcatggaaaccttcctcttgcgagtccatcttgtggaaccagactgtaacatc
atccgcctgagcagcagtatgctggaggtgactgaattctacggattgtcccaagccatt
gataagaacctgctccagtttgactatgataggaaagccaacttggactgcaccatcaga
ctggacccagtggggactcatctgccagcccatggcaagctggttacgctgaatcataag
ccggagggacctcgtggagatcagccgcacagctttttttcggagacccgtatgtacctc
ttcatagttaagctaaagttgagcgtcaagctgaagtgtccaggtggaagctgtgccctg
ggactgcaggaagtggggagtctgagagcgagttgtgaggagttcctgatgatggggctt
cgctaccaacacacacgccccccttctcccaacgtcgattatattgccatccagctggat
ctcacggacaggaggagtaaaaccacgtacaagtcagagagtgcgtggttgcctgtcaac
attagggtgggcattcctaaccaggcccccagggctgctttcatggccatgtttgttctg
gaggtggaccaattcattctcacccccctgacgacctccgttctggactgtgaggaagat
gagacccccaaacccttgctggtgttcaacatcactaaggccccgccccagggctatgtg
acccacctgctggaccataccagacccatctcttcgttcacctggaaggatctaagtgac
atgcaggtcgcctaccagccaccaaacagcagttaccctgagaggagacactacaagctg
gaggtggaggtgtacgacttcttctttgagaggagcgcccccatcacggtccacatctcc
atcagaacagcagacacaaatgcgccccgggtgtcttggaatacaggtctgaatctcctc
gaggggcagtctcgggccatcacttgggaacagtttcagatcgttgacaatgatgacatt
ggtgctgtgcagttggtcaccattggtggcctgcagcatggacagcttacagtaagagag
gggaaaggatttctcttcactgtggccgaccttcaggctggagtcgttcgctatcatcat
gatgacagtgactctaccaaagactttgtggctttcaggatatttgatggccaacacagc
agccatcacaagtttcctatcaacatcttgcctaaagatgacagtcccccatttctcata
accaatgttgttattgaactagaagaggggcagactgtcttgatccaagggtccatgctg
agagcttcagacgtggactccagtgacgactacatcttctttaatatcacaaggttccca
caggctggggagatcatgaagaagccagggccaggactggtagggtatcctgtccctggc
ttccttcagagagacctgttcagtggaatcatttactatcgtcactttggtggagaaatc
tttggagattcttttgaatttgtcctgtgggacagccacgaacctccgaatctctcaggg
ccacaggtggtgacgatccatatctctccagtagctgaccagcttccaaaagaagctcct
ggcatttcccggcatttggttgtcaaggaaacggaggtggcctacatcaccaaaaagcac
ctacatttcctagatacagaatcacaggatggggagctcgtctacacagtaacacgtcct
ccgtgtttcttcttcagccacagacacttggacgctgggaagttattcatggtggacagc
ataccaaagctaaccaaaaaccctacagccctggggctgaggtcatttacccagcacgct
gtgaaccatatgaaagtggcctacatgccacccatgcaagatataggtcccacccctcga
catgtacaattcacagtgtctgtcaggaaccagcgtggaggcaccttgcacggaatctgc
ttcaacatcacgattctcccagtggacaatcaggttcctgaggtattcaccaataccctg
agagtggccgagggtggtcagtgcaccatcagcacagagaacatcctggtttctgatgtg
gacaccccattggacagcatctgcctctctcttcggaagatgcctctccacggcagggta
gagctcaatgggtttccccttaacccaagagacacattttcatggaaggacctcattacc
ttaaaagttaggtatcaccatgatggagctgaggttttccaggatgagatattcttggag
gtcacagatggcacaaactcagcagaatttgtcctacacattgaggtattccctgtgaat
gatgagccacctgttctgaaggctgacctcatccccatgatgcattgctcagagggtgga
gaggtgactatcacccctgaatacatttttgctactgatgcagacagcgacgacttgaaa
ctattgtttctgattgcccgagaacctcagcatggggtggtgagaaaggctggaatccgc
gtggacaggttctctcagggagatgtcatctcaggggctgtgacgtacaaacacacaggt
ggtgagattggcctggcaccttgttttgacaccattatgttggtggtttcggatggtgag
gccggccctttggtgaatgactgttgctacaacggacctgatccatctgctcctcttcat
gagtcctttcccatgtacgagctcaacatcacagtgcatcccgtcgacaaccaggcacct
tcagtcatcataggtaggcggctcgtggtggacgaaggcttctcaggaaccctcacgact
agtcatttgacggccgctgacccggacaccgcgccagatgacttagaatttgttttggtg
tcgcaccctcagttcggctaccttgaaaacacactcccttctgcaggttttgagaaaagt
aacatgggcataagtatagcttcgttccggtggagagacatgaaggctttgcacattaac
tatgtgcagtccaggcacctgagggtggaaccaactgccgatcagttcatggtgtatgct
acagacgggaaggcacgctccttagagacaacatttcatgttatcatcaaccccacaaat
gatgaagcgcctgactttgcggtacagaatatcactgtgtgtgagggtcagatgacagag
ctggattcttcctttatcactgctgctgacagagacgttcccaaggactccttactcttc
agcatccctcgcaagccccagcatggcctcctcatccacatggcgatcagcaaagagtct
cctcaaatcaaacaggaaattcacaacttctccatggaccttctcaaggctggaatgaag
ctggcgtatgtccatgacgactcggagagcctcactgatagttttgtgatccagttgtct
gatgggaagcatataattcttaaaaccatttcagttgccatcaccccagtgaacgatgag
aaaccaacgctaagcaagaaggctgaaatctctatggccgcgggcgatacgcgtgttctg
tctagtgctgttctttctgccatcgataaagactctcccagggagaccattcactattta
ttcgaaaggcttccccaaaacgggcaacttcagcttaagataggaagggactgggtccct
ctctcagctggcatgcagtgcacccaggaggatgtggacctaaacttgctgagatacaca
cacactggcaagatggattcccagaatggagacagtttcgccttctacctctgggatggg
gacaacagatcacctgtgtttgactgtcacatcatcattgaagattcgcggaaaggtgat
attgtgattcatgcaaaaccactcgtggtagccaaaggtgacagaggtttcttgtcgact
gccactctcctggctgtggatggagcagacaagcccgaggaactgctctacctcctcacg
tccccgccgcagtatggccaggtggagtacgtccactatcccggagtccccatcaccagc
tttagccaaatggacatagcaggacagacagtctgctatatacacaagagccgggcggcc
gtccccaatgacagcttcagatttaccatcagcaacggactgcagacccggcagggggtg
tttgagatcacactggagactgcggaccgggccttgcctgtggtgaccaggaacaagggg
ctgaggctggctgaagggaccgtgggcctcctgtccactgagcacctccagctgaccgac
cctgacacccctccagacaacctaaccttccttctggtccagctcccccgccacgggaac
ctccacctgagggggaaagtccttctccataactttacccagcaagacgtggacagcagg
gatgtggcctatcagcactccggaggcggctcccaggcggacggcttcactttcctggcc
acagacaggatgaaccaaggctttgttgtggacgggaaggtgcggaaacagcctgttctc
ttcaccatccaggtggaccagctggacaaagcagcaccccggatcatacgcctgcactcc
ccttctcaagtggggctcttgaaaaatggctgttacggcatttacatcacttcccatgcg
ctgaaggcgtcagaccctgacacagaggatgaccagatcatttttaagattttaaggggc
ccactgcacggacgtctggagaacacgactacaggtgattttatccatgagcaatttagc
cagaaggacttaagcagcaagaccattctttacatcataaacccatctctgcaagtgaat
tcagatattctggaatttcagatcatggaccctgcagggaataccgccacccctcaaagc
ttggagctgaagtggtcttttattgaatggttccagactgaatacgaggtctgtgaaaat
gtgggcttgttgcccttggaagttaccagaaggggctattccatggattctgcctttgtg
ggcatagaggtcaaccaagtgtcagctgtagttggaaaagattttactgtcacgccttcc
aaactgatccagtttgacccaggaatgtcaactaagatgtggaatatagcaattacctat
gacggattagaggaagatgatgaggtctttgaagtaattctgaactcccctgtgaatgcc
gttcttggcacaaagacaaaagctgcagtgaaaattttggactcaaaaggaggacggtgc
catccttcagattccttcaaccaaagcaagcacagcacgtgggggaagggcagcgggcag
ccgctgcgcccagggtcatcctcgctcacccccgctggctctcctcatctggaaagaggg
ccttctccatctctcaccaaaggagatgcccttcagggctttgatcccacagacctctct
cagaggaagatgaggacccatgggaatggcaaatcagttcatccttcctccgtttgtaga
aatggaacagacaccatctacaattatcatggcatagtttccttgaaactagacagtgac
ggtttctctgctcacaaacggaaggccaagctttccatcattaggccgccgcagaagaca
atccaggtggcagaactgcctctagctgataaggtggaatccacagctggctcacacttc
cccagacagggtcagctgccctcgtttccaaaggactgctctgtggcattaaagggactg
tttcattttgaagaaagcacccacagactgtatctatgtgatgggaccacctggaaagcc
tggagcccccaaaccaaggggctggaggacaaatcctgcccagctggatggcatcttcac
tcaggctattgccacaccttggtcacacagaggaaaggcacctggaccacagctacccga
gtttgcagagaacagtatcagggcaaccttgtgaccgtcttctccaggaggcatatgcag
tggttatgggatatcagtggaagaaagcccttctggataggtttgaagaaccaagcacgc
actggacactgggagtggattggaggtgaaccttttgctttcaccaactggaagagaggg
ccccctcagcacccaaagcctgggaagaactgtgttttggttcacaaaagaggacaatgg
caatcaaagaactgtagtaaaggcaaggcccacaattttgtgtgctcaaggaaactccaa
atacctcacatgagtccatcaagcagtattgcgggtgctcctacacagagttcgcacaga
gttcgagtgaagctagccctgcatctccagtcagccagggttgaatgccaagatttggta
cgcatcctgaagctcttttaa
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integrated database retrieval system
