Arvicola amphibius (Eurasian water vole): 119817568
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Entry
119817568 CDS
T08327
Symbol
Focad
Name
(RefSeq) focadhesin
KO
K27498
focadhesin
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamp03019
]
119817568 (Focad)
Messenger RNA biogenesis [BR:
aamp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
119817568 (Focad)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Focadhesin
DUF3730
HEAT
Motif
Other DBs
NCBI-GeneID:
119817568
NCBI-ProteinID:
XP_038190814
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All DBs
Position
6:complement(57827525..58109965)
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AA seq
1798 aa
AA seq
DB search
MSDDIRKRFDFPNSLIQSQAVGHLIAAVLKEHGVSEKIHQATNQTAALNLLWEKCCSDNV
VVRTACCEGLVALVAQGHAEFSYVLNGILNLIPSTRNMTGLIKALVKLLQIQALKEGQIG
EKDIRDIYTIRTHPQPLITVLEHRPDCWPLLLQQLTAFFQQCPERSEVSCIQIMAPFLWY
LYCDPSQSQDYAKLRLSLLKVLLQPRGLCGEVQPSVLEQHMLQLCCDMVPCLQMKDLTQT
TEMMLFIEELYLSLLRHPVFWKSQLTQLTLQLLCICEVSLKITGECSSLIRLLDRSIELL
GEDFPVKFVIIGTAFLLLQTPASQQKPMLNLALKLLSVSEGQKIPKASLLLVVPLLQILS
STALEDCLAVGEEGPSRQQLALNLLEVLQRECYGDNDHMLSCRLTFPVSSMYGSVFTTWR
VLEVLGEEAATCDWLASVESLLPLITVVPTHVFLLLAHLLVEDTGQNLQQILKVTTKLAQ
ADSAQVPNLIPVLMFKLGKPLDPVLYNDILYTLPTLGVHKVCIGQILRVIQLLGTTPQLR
AVTLRLLTSLWEKQDRVYPELQRFMALSDVPSLSEGKELQWEKLIAKAASIRDICKQRPY
QHGADMLAAISQVLNECTKPDQATPASLVLQGLHALCQAEVVCVRSTWNALSPRLSCDTR
PLILKALSELFSLVPSLAVNTAEYENFKVQVLSFLWTHTQNKDPIVASAAYKSLSHFSSG
EHTVLHLPEKIRPEMPVPDELDEEETVDLSIPGPCYLRLLTITTPSVLPALEEFFTSLVK
QEMVNMPRGIYHSALKGGIRSDQGKTVAGIPNFILKMYETNKQPGLKPGLAGGMLFCYDV
AMYQSKDGKPLNRLMASRGRSFKQTSLALVHEVHVQPSEWHRALFLPQAWLAYMTRAYHA
VLQGRIAELELQLQHGKEGPEEVQYKRNTAWLWVRDMLTDEITKTAAKESPVVKGNALLA
LSSLAVVVSKHEASLSSDSDGVLEVQPNFLPVKEWVSMVLNTLLVIVDSHYHPRGQLFSC
FYHKSYSGENTASAIARSAAATALSLLVPVFIISCKEKVEEILNMLTARLPGKPSADESQ
AVQIHMGLALGMFLSRLCEEKLSDMSGQQMNLLLIKSLDALENCCFDLSLEHNTGCVLGV
GLALSLMSHSSHTESRVHVAASLRKLSTYLDDSASQSRTFQEVLAYTLSCVCTSAFSAGI
IEAVEAEDVMNKLQLLVESNQQTSGFALALGNLVHGLSVCGHGKAEDLGSRLLPSWIKVV
LAQGSSTMLCLAALHGLVALVGSDVDVMQLKSEAIQSARSQARLNEVIRTLTEVINVSGV
IGLQSNAIWLLGHLHLSTLSSNQSRTSVPTDYSYLPEGSFIRAAIGFFVTGGKKGPEAVP
PSLLKVVMKPIATVGESYQYPPANLAALLSPLMRLNFGEEIQQLCLEIAVTQAPSSQSAA
ALLGLWVMPPLIHGLSTNIKKYLLVSLPLWVKHVSDEQSQSFVENLMVAVFKAASPPSHP
ELCLSALQGLSQAMKLPSPSHHLWSLLCDATGRIFDLLPNRIRRSDLELYISVAKGLSEM
TDDGASRLSQVTQDNIEKAAFVKLYLVSQGRLPLMSLMDLITAAMQHHEKQTLAWMILHC
LYQARIVSHANTGVLKRLEWLLELMGYMRNLGYQPASDQRVALHEALDFLLLIFAAAVMV
WADHEAPLLLGLSASWLPWHRENGASGPATALLGRSPMHRVTVQEVLTFLPSSMLLLLQK
EPWKEQTQKFIDWLFSIMEIPNEAFAAKSKDLLKATLLSLRVLPEFKKKAVWTRAYGW
NT seq
5397 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatgatatcaggaaaaggtttgattttccaaattctcttatccagtcacaggct
gtaggtcatcttattgctgctgtcctaaaagaacatggcgtttcagaaaagatacaccaa
gccacaaaccagacagccgccttgaacttgctgtgggagaagtgctgcagtgacaatgtg
gtggtccggacagcctgctgcgagggcctggtggcacttgttgctcagggtcatgcagag
ttcagctacgttctcaatgggatactcaacctgattccttccaccaggaatatgactggt
ttgataaaagcccttgtgaaattattacaaatccaagcactaaaggaaggacaaattggg
gagaaggacattcgggatatatacactatcagaactcatcctcagcctttgatcaccgtg
cttgaacacaggcctgactgctggccactgctcctgcagcagctgactgccttcttccag
caatgccctgaaaggtcagaagtttcatgtatccaaataatggcaccatttctgtggtat
ctctactgtgatccatcccagtcacaagattatgctaagctccggctgtccctgctcaaa
gtcttacttcaacccagaggtctttgtggtgaagttcaaccttcggtactggagcagcac
atgcttcagctgtgctgtgacatggtcccgtgcttgcagatgaaagatctgacacagaca
acagagatgatgctatttattgaggagctgtatctaagtcttctgcgccatcctgtgttc
tggaaaagtcagcttacccaactcacccttcaactgctgtgtatctgtgaagtcagttta
aagataactggggaatgctcatctctcattcggcttttagatcgcagcattgaacttctt
ggggaggattttcctgtcaaatttgtcattattggaactgcttttttacttctgcagact
ccagcaagtcaacagaagccaatgttaaacctagctttgaagctcctctctgtttctgag
ggtcagaaaatcccaaaggcatccttgctgctcgtggtgcctcttctgcagatcctgtct
tccaccgccttggaagactgtttggccgtgggtgaggaaggtccctccaggcagcagttg
gctctgaatcttttggaagtgctacagagggagtgttatggagacaatgaccacatgctc
tcctgcaggctcacttttcctgtgagcagcatgtatggttcagtcttcaccacctggagg
gtcctggaagtgcttggagaagaggcagcaacgtgtgactggctggcttcagtggagtcc
ttgctcccgctcattaccgtggtccccactcatgtgtttttactgctggctcacttgctt
gttgaagatacaggacagaatcttcagcagatactgaaggtcaccacaaagttagcccaa
gcagattccgctcaggttccaaatctgattccagttttgatgttcaaattgggaaaacca
ttagaccctgtattatacaatgacatattgtatactttaccgacccttggtgttcacaag
gtatgcatagggcagattctgcgggtaatccaactgcttggaaccactccacaactaaga
gctgtcacattgcgcctattgacatctctgtgggaaaagcaggatcgtgtgtaccctgag
ctgcagcgtttcatggccttgtctgatgtgccctctctctctgagggcaaggagctccag
tgggagaaactgatcgcaaaagctgcatccatcagagatatctgtaaacagaggccctat
caacatggtgcagatatgttggcagccatttctcaggtgctgaatgaatgcacaaagccc
gatcaagctaccccagcctccttggtgttacaaggtcttcatgcactctgccaggctgag
gttgtctgcgttcgctctacttggaatgctctctctccgaggctgagctgtgacacgagg
ccactcatattgaaggccctgagtgaactgttttctctggttccctccttagcagtcaat
acagctgaatatgagaattttaaagtccaagtcctcagcttcctctggactcacactcag
aacaaggatcccatcgtagcaagtgctgcctataaatctctgtctcacttcagctcagga
gaacacaccgtccttcacctgccggaaaagataaggccagaaatgcctgttcctgatgag
ctggatgaggaggagactgtggacctttccattcctggcccttgctatctgagactgttg
acaatcaccacgccttcagttttaccagccttggaagaattctttacatcccttgtgaaa
caggagatggtgaatatgccccgcggaatatatcactcggcattgaaaggaggcatccga
tcagaccaagggaagacagtagcaggaatccccaattttatactgaaaatgtatgaaaca
aacaagcaaccaggactgaaacctgggctagcaggtggcatgttgttttgctatgatgtt
gccatgtatcagagtaaagacggcaagccgctgaatcgactgatggccagtagagggcgg
agcttcaagcagacttccctggcccttgtccatgaagtccatgtccagccgtcagaatgg
caccgtgcgctctttcttccacaggcctggcttgcgtatatgactcgagcataccatgct
gttttacagggcaggatagcagagctggaactgcagttgcagcatgggaaagaaggaccc
gaggaggtgcagtataagcgaaacacagcctggctctgggtcagagacatgttgactgat
gagattaccaagacagctgcgaaggagagtccagtggtcaaaggaaatgccctgttggcc
ctaagcagccttgctgttgtggtgtccaagcacgaagccagcctctcctcggattctgac
ggagtcctggaggttcaacctaatttccttccagtgaaagagtgggtttccatggtgctt
aatactctcctagtcatcgtggatagccattaccaccctagaggacagcttttctcctgc
ttttatcataagtcctattctggtgagaacacggccagcgctattgcgcgctctgccgcc
gccacggctttgtctctccttgtgccggttttcattatctcttgcaaagagaaggttgag
gaaatcctgaacatgctgactgccaggttacctgggaaaccaagtgctgatgaatctcaa
gccgtgcaaatccacatgggccttgctttggggatgtttctctctcgcttgtgtgaagag
aaactaagtgacatgtctggccagcagatgaaccttcttctgataaagtccttggacgcc
ctggaaaactgctgttttgacctcagccttgaacacaacaccggctgtgtattgggagtt
ggacttgccctgtccctcatgagccacagcagccacacggagtcacgagttcatgtggca
gcatctctgcggaagctgtctacctacctagatgacagtgcgagccagagcaggacattt
caggaggtccttgcctacactctcagctgtgtgtgtacatcggcgttcagtgctggcatt
attgaggctgtggaggctgaagatgttatgaacaagcttcagctgttggtagagagcaac
cagcagacttcgggctttgcgctggcattaggaaacctggttcatggtttgtctgtgtgt
ggacatggaaaagccgaagacttgggcagcagactcctccccagctggattaaggttgtc
ctggcacagggttcctccaccatgctctgtctcgcagctcttcatggtctggtggcgctg
gtaggctcagatgtggatgtaatgcagctcaagtcggaggccatccagagcgcccgttct
caagcaagacttaatgaagtcattagaaccttaactgaggtcatcaatgtctcgggggtg
attggtcttcagtcaaatgcaatatggcttctaggacatcttcatctatctactttgtct
tcaaatcaaagcagaacttctgtgcctactgactacagctatttgcccgaaggcagtttt
attagagcagccattggcttcttcgttacaggaggaaaaaaaggtcctgaagctgtgcct
ccctcccttctcaaagtagtaatgaaacccatagcaactgtaggggaaagctaccagtat
cctcccgcaaacttggctgcactcctctctccacttatgaggctaaactttggtgaggag
atccagcagctatgccttgagatcgctgtgactcaggcaccatcatcgcagagtgcagct
gcgctgttgggcttgtgggtgatgccaccactgatccatggactgagcacgaatatcaag
aaatacctcctggtatcgctgcctctgtgggtaaaacatgtctctgatgaacagagccag
agttttgttgaaaacctgatggtggcggtttttaaagcagcttccccacctagtcatcct
gagttgtgcctaagtgccttacagggtctgagccaggccatgaaactgcccagcccttcc
caccacctctggagtctgctctgtgatgctactgggagaatttttgacctgctgccaaat
aggattcggagaagtgacctcgaactgtacatcagtgtagcaaagggcctctcggagatg
acggatgacggtgccagccggctttcccaggtcacccaggacaacatagaaaaggctgcc
tttgtcaaactgtacttggtctctcaaggacgactccccttgatgagcctaatggatctg
atcacggccgccatgcagcaccatgagaaacagactctggcctggatgatcctgcactgc
ctttaccaggcacgcattgtgagccatgccaacacaggcgtgttgaagaggctggagtgg
ctcctggagctgatgggttacatgagaaaccttgggtaccaaccagcgtctgaccagcgt
gtggctctccatgaggctttggacttcttgctgctgatatttgcagccgcggtgatggtg
tgggcagaccatgaggccccacttctccttggcctcagtgccagttggttgccatggcat
cgggagaatggcgctagtgggccagcaacagccttgcttggcaggagtccgatgcataga
gtgaccgtgcaggaggttctcactttccttcccagtagcatgctattgctgctacagaaa
gagccgtggaaggaacagacccagaagttcattgactggctatttagcatcatggaaatt
cctaacgaagcctttgcggcaaagtctaaggatcttttgaaagctaccctcctatccttg
cgagttctgccggagtttaagaagaaggctgtgtggactagagcatatggttggtga
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integrated database retrieval system
