Arvicola amphibius (Eurasian water vole): 119817657
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Entry
119817657 CDS
T08327
Symbol
Prpf4
Name
(RefSeq) LOW QUALITY PROTEIN: U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119817657 (Prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aamp03041
]
119817657 (Prpf4)
Spliceosome [BR:
aamp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
119817657 (Prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_Prp19
WD40
Beta-prop_THOC3
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_Gbeta
WD40_WDHD1_1st
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
PRP4
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
NBCH_WD40
Beta-prop_EML
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_Aladin
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_DCAF4
Beta-prop_IFT122_1st
WD40_like
WD_LRWD1
Beta-prop_Vps41
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
119817657
NCBI-ProteinID:
XP_038190928
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All DBs
Position
6:complement(84041776..84059988)
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AA seq
527 aa
AA seq
DB search
MASSRASSTATKAKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGIWGKEGLKAGIE
AGNINITSGEVFEIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITL
FGEGPAERRERLRNILSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLKVARLWI
ANYSLPRAMKRLEEARLHKEIPETTRTSQMQELHKSLRVRWLFTVFLNNFCSQIGTIWPI
SYCHFSPDLNASHSCWSGLCKLWSVPDCSLLHTLRGHQHKCRSIVFHPKSTRLIGPKDVN
LASCAADGSVKXWSLDSDEPVADIEGHTVRVARVMWAPSGRFLGTTCYDRSWRLWDLEAQ
EEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINF
SPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGDFLLTGAYDNTAK
IWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctctcgagcctcctccacggcaaccaaagctaaagcacctgatgatttagtt
gctcctgttgtgaagaaaccacacatctattatggaagcttggaagagaaagagagggaa
cgcctggccaaaggagaatctgggatttgggggaaagaaggactgaaagcaggcattgaa
gccgggaatattaatataacctctggggaagtgtttgaaattgaggagcacatcagtgag
cggcaggcagaagtcttggcagagtttgaaagaagaaagagagcccggcaaatcaatgtc
tccacagatgactcagaggtcaaggcttgccttcgagccttgggagaacctatcacactt
tttggagagggccctgctgaacgaagagaaaggttaagaaatatcctctcagtggttgga
accgatgccttaaaaaagactaaaaaagatgatgagaaatctaagaaatcaaaagaagag
tatcaacaaacctggtaccatgaaggaccaaatagcctaaaggtggccagactgtggatt
gctaattattcactccccagagcaatgaaacgcttggaagaggcccgtctccataaggag
attcctgagacaaccagaacctcccagatgcaagagctgcacaaatctctccgggtaagg
tggctcttcactgttttcttgaataatttctgcagtcagattgggacgatctggcctatc
tcctactgccacttcagtcccgatctaaatgctagccacagctgttggagtgggctctgc
aaactctggtctgtgcctgactgcagcctccttcacactcttcgaggccatcaacacaaa
tgtaggagcattgtattccatcctaaatccacccgtctcattggaccaaaggatgtcaac
ttggcctcttgtgctgctgatggttctgtgaagncttggagtctggacagtgatgagcca
gtggcagatattgaaggccatacggtgcgtgtggctcgggtaatgtgggcaccgtcggga
cgtttcctgggcaccacctgttatgaccgttcatggcgcttgtgggatttagaagctcaa
gaggagatcctgcatcaggaaggccacagcatgggtgtgtatgacattgccttccatcaa
gatggctctttggctggcactgggggactggatgcatttggtcgagtttgggacctgcgc
acaggacggtgcattatgttcctagaaggccaccttaaagaaatctatggaataaatttc
tcccccaatggctaccacattgcaactggcagcggtgacaacacctgcaaagtatgggac
cttcggcagcgacgttgtgtctacaccatccctgcccatcagaatttagtgaccggtgtc
aagtttgagcctatccatggagacttcttgctcacaggtgcctatgataacacagccaag
atctggacccacccaggctggtccccattgaagactttggctggtcatgagggcaaagta
atgggcctagacatttcttctgatgggcagctcatagccacttgctcgtatgacaggacc
ttcaagctctggatggcagagtag
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