Arvicola amphibius (Eurasian water vole): 119818118
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Entry
119818118 CDS
T08327
Symbol
Taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
119818118 (Taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aamp03021
]
119818118 (Taf5)
03036 Chromosome and associated proteins [BR:
aamp03036
]
119818118 (Taf5)
Transcription machinery [BR:
aamp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
119818118 (Taf5)
Coactivators
SAGA/TFTC/STAGA complex
119818118 (Taf5)
Chromosome and associated proteins [BR:
aamp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
119818118 (Taf5)
STAGA complex
119818118 (Taf5)
TFTC complex
119818118 (Taf5)
SAGA complex
119818118 (Taf5)
SLIK complex
119818118 (Taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Prp19
WD40_Gbeta
TFIID_NTD2
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
Beta-prop_WDR36-Utp21_1st
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_Aladin
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_VPS8
Beta-prop_IFT140_1st
Beta-prop_WDR41
Beta-prop_EIPR1
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_SPT8
WD_LRWD1
Tricorn_2nd
Beta-prop_DCAF12
Beta-prop_Nup120_160
PEP5_VPS11_N
RAB3GAP2_N
CDK5RAP3
Beta-prop_RIG_1st
eIF2A
Cytochrom_D1
Beta-prop_ACSF4
LisH_PAC1
PROPPIN
Motif
Other DBs
NCBI-GeneID:
119818118
NCBI-ProteinID:
XP_038191538
LinkDB
All DBs
Position
1:186830076..186846210
Genome browser
AA seq
803 aa
AA seq
DB search
MAALAEEQTEVAVKLEPEGPPTLLPPQTGDGAGEGSGGTPNNGPNGGSGNVAAVAATAAA
GGDGGTPKPVVAVSASAPAGAAPVSAAPTEAGAPHDRQTLLAVLQFLRQSNLREAEEALR
REARLLEEAVAGSGAPGELDGAGAEAASALLSRVTASVPGSAAPDPPGSGASGATVFSGS
ASGPVAPGKVGSVAVEDQPDVSAVLSAYNQQGDPAMYEEYYSGLKHFIECSLDCHRAELS
QLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETM
LDFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVG
SLAGEAKREANKSKVFFGLLKEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSAGSKSKKQ
DPNAPPQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVD
VTDDSSLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELK
ILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYG
YYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVL
NGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSL
RFSRDGEILASGSMDNTVRLWDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKS
TPVVHLHFTRRNLVLAAGAYSPQ
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctggcggaggagcagacggaggtggcggtcaagctggagcctgagggaccg
ccgacgctgctacccccgcagactggcgacggcgcaggcgagggtagcggtggcactccc
aacaacggccccaacggcggcagcgggaatgtggcggccgtggcggcgacggcggcggcc
ggcggggatggcgggacccccaagcccgtggtggccgtctctgcctctgccccggcgggg
gcggccccggtgtccgccgctcccacggaggccggcgctccccacgaccggcagaccctt
ctggcagtgctgcagttcctccggcagagcaacctccgcgaggccgaagaggcgctgcgc
cgtgaggcccggctgctggaggaggcagtggcgggctccggagctccgggagagctggac
ggggccggcgcggaggcggctagcgcgcttctcagccgggtcaccgcttcagtccccggc
tctgcggcccctgaccctccgggcagcggcgcttcgggggccacggtgttctcgggttca
gcctcaggtcctgtggctccaggaaaagttggaagtgtagctgtggaagaccagccagat
gtcagtgctgtcttgtcggcctacaaccagcaaggagaccctgcaatgtatgaagaatac
tacagcggactgaaacacttcattgaatgttctctggactgccatcgagcagaattatcc
caactcttttatcctctgtttgtacacatgtacttggagctagtttataatcaacatgaa
aatgaagcaaaatcgttctttgagaagttccatggagatcaggaatgttattaccaggat
gacctacgagtattatctagtcttaccaaaaaggagcatatgaaagggaatgaaaccatg
ctggactttcgaacaagtaaatttgttctccgtatttcccgtgactcttaccaactcttg
aagcggcatcttcaggagaagcagaacaatcagatctggaacatagttcaggagcacctc
tacatcgacatctttgatgggatgcctcggagtaagcaacagatagatgccatggtggga
agtctggcgggagaggctaagcgagaagcaaacaaatccaaggtattttttggtttatta
aaagaaccagaaattgaggtgcctttggatgatgaggatgaagagggagaaaatgaagaa
ggaaaacctaaaaagaagaagcctaaaaaggatagtgctgggtctaaaagcaagaaacaa
gatcccaatgccccgcctcaaaacagaatccctctccctgagttgaaagattcagacaaa
ctggacaaaataatgaatatgaaagaaactaccaaacgagtacgccttgggcccgactgc
ttaccctccatttgtttttatacattccttaatgcttaccagggcctcactgcagtggat
gtcactgatgattccagtctgattgctggaggttttgcagattcaaccgtcagagtgtgg
tctgtgacacctaaaaagcttcgtagtgtcaaacaagcatcagatcttagtcttatagac
aaagaatcagatgatgtcttagaaagaatcatggatgagaaaactgcaagtgagttgaag
attttgtatggtcacagtgggcctgtctatggagccagcttcagtccggataggaactat
ctgctctcctcttcagaggatggaactgttagactctggagccttcagacatttacttgc
ttggtgggatataaaggacacaactacccagtatgggacacacagttttctccatatgga
tattattttgtgtcaggaggccatgaccgagtagctcggctttgggctacagatcactat
cagcctttaaggatatttgctggacatcttgctgatgtgaattgtactagatttcatcca
aattccaactatgttgctacgggctctgcagacagaactgtgcggctctgggatgtgctc
aatggtaactgtgtcaggatcttcactggacacaagggaccaattcattccttgacattt
tctcccaatgggagattcctggccacaggagccacagatggcagagtacttctttgggat
attggacatggcttgatggttggagaattaaaaggccacactgatacagtgtgttcactt
aggtttagtagagatggtgaaatactggcatcaggttcaatggataatacagtacggtta
tgggatgccattaaagcatttgaagatttagagactgatgactttactaccgccactggg
catataaacctacctgagaattcccaggagttattattgggtacatatatgaccaaatca
acaccagttgtacacctacattttactcgaagaaacttggttctagctgcaggagcttac
agtccgcaataa
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integrated database retrieval system
