Arvicola amphibius (Eurasian water vole): 119818487
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Entry
119818487 CDS
T08327
Symbol
Rc3h2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
aamp03000
]
119818487 (Rc3h2)
04121 Ubiquitin system [BR:
aamp04121
]
119818487 (Rc3h2)
Transcription factors [BR:
aamp03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
119818487 (Rc3h2)
Ubiquitin system [BR:
aamp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
119818487 (Rc3h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
zf-C3HC4
Prok-RING_4
zf_CCCH_4
zf-CCCH_UNK
zf-C3HC4_4
zf-C3HC4_2
Xin
Motif
Other DBs
NCBI-GeneID:
119818487
NCBI-ProteinID:
XP_038191830
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All DBs
Position
7:57069584..57121885
Genome browser
AA seq
1198 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD
IDVLPVNFALLQLVGAQVPDHQSIKLSNLGENKHYEVAKKCVEDLALYLKPLSGGKGVAS
LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI
DPNPDAASPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR
QQGGCPRGTNCTFAHSQEELEKYRLRNKKMSATVRTFPLLNKVGINSTVTTTAGNGISVI
GSTETSGKIVPSTNGISNAENSVSQLIPRSTDSALRTLETVKKVGKVGTNGQNPAGPSAE
SVSENKIGSPPKTPVSNAAATSAGPSNFGTELSSVPPKSSPFLTRVPVYPQHSESIQYFQ
DPRTQIPFEVPQYPQTGAYVFYIPTITGYYPPPPTVPAGVTPCVPRFVRSNNVPESSLPP
ASMPYADHYSTFSPRDRMNSSPYQPPPPQQYGPVPPVPSGMYAPVYDSRRIWRPAMYQRD
DIIRSNSLPPMDVMHSSVYQTSLRERYNSLDGYYSMACQPPNEPRTTVPLPREPCSHLKT
SCEEQIRRKPDQWAQYHTQKAPVSSTLPVATQSPTPPSLFSVDFRTDFSESVSGTKFEED
HLSHYSPWSCGTIGSCINAIDSEPKDVIANSNAVLMDLDSGDVKRRVHLFETQRRTKEED
PIIPFSDGPIISKWGAISRSSRTGYHTTDPVQATASQGSTTKPISVSDYVPYVNAVDSRW
SSYGNEATSSAHYIDRDRFIVTDLSGHRKHSSTGDLLSIELQQAKSNSLLLQREANALAM
QQKWNSLDEGRHLTLNLLSKEIELRNGESDYTEDIVDTKPDRDIELELSALDTDEPDGQS
EQIEEILDIQLGISSQNDQLLNGTAVENGHPGQQQQKDPVKQKRQSLGEDRVTLEEQKTI
LPVTSCFNQPLPVSISSAGCLPITTSVSVGNLILKTHVMSEDKNDFLKPIANGKMVNS
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaggcagctcagtggacagagtttctgtcctgtccaatctgctataatgaa
tttgatgagaatgtgcacaaacccatcagtttaggttgttcacatacagtttgcaagacc
tgcttgaataaacttcaccgaaaagcgtgtccttttgaccaaactgccataaacacagac
attgacgtactccctgtcaactttgcacttcttcagttagttggagcccaggtgccagat
catcagtcaataaaattaagtaatctaggtgagaataaacactatgaagtggcaaaaaaa
tgcgttgaagatttggcactctacttaaaaccactaagtggaggtaaaggtgtagctagt
ttgaaccagagtgccctaagccgtccaatgcaaaggaagctagtcacacttgtaaactgt
caactggtagaggaagaaggtcgtgtcagagctatgcgagcggcccgttcactaggagaa
agaactgtgacagaactgattctgcagcaccagaaccctcagcagctgtctgccaaccta
tgggctgctgtcagggctcgaggatgccagtttctagggccagctatgcaagaagaagcc
ttgaagttagtattactggcactggaagatggttctgccctctcaaggaaagttctggta
ctttttgttgtgcaaagactagaaccaagatttcctcaggcatcaaaaacaagtattggt
catgttgtgcagctactgtatcgagcttcttgttttaaagttactaaaagggatgaagac
tcttccctgatgcagctaaaagaggaatttcggagttatgaggcactgcgcagagaacat
gatgcccaaattgttcacattgccatggaagcaggactccgtatttcacctgagcagtgg
tcctcactgctgtacggggacttggctcataagtcacacatgcaatctatcattgataag
ctacagtctccagaatcatttgcaaagagtgtccaagaattgacaattgttttgcaacga
acaggtgacccagctaatttaaatagactgaggcctcatttagaacttcttgcaaacata
gaccctaatccagatgctgcttctccaacttgggaacagctggaaaatgcaatggtagct
gttaaaacagtggttcatggtcttgtggacttcatacaaaactatagtagaaaaggccac
gagacaccccagcctcagccaaacagcaagtacaaaactagcatgtgccgagatttgcga
caacaagggggttgtccacgaggaacaaattgtacatttgcccattctcaggaagaactt
gaaaagtaccgattaaggaacaaaaagatgagtgcaactgtaagaacattccctcttctg
aataaagttggtataaacagcactgttacaaccacagctggaaatggcatttcggtcata
ggaagtactgaaacatctgggaaaattgttccaagtacaaatggaatttcaaatgcagaa
aacagtgtttcccagctaatcccacgaagcactgacagtgcgctaagaactctagagact
gtgaagaaagtcgggaaagttggcactaatggacagaaccctgctgggccctctgcagag
tctgtgtctgaaaataaaattggttctcctccgaagactcctgtaagtaatgcagcagct
acctccgctgggccctctaattttggaacagagttaagctctgtgcctcccaaatccagc
ccatttctaactagagttccagtatatcctcagcattctgaaagcattcagtattttcaa
gacccaaggactcagataccctttgaagtcccacaatacccacaaacaggtgcatatgtt
ttctacattcccactattacaggatactacccaccacctccaacggtaccagctggtgtg
actccttgtgttcctcgctttgtgaggtccaataatgttccagagtcctccctcccacct
gcttccatgccatatgctgatcattacagtacattttcccctcgagaccgaatgaattct
tctccttaccagcctcctcctccgcagcagtacggaccagttcctccagtaccttctgga
atgtatgctcctgtgtatgacagcaggcgcatctggcgcccagctatgtaccaacgagat
gacattattagaagcaattctttacctccaatggatgtgatgcattcatctgtctatcag
acatctttacgggaaagatataattcattagatggatattattcaatggcttgtcagcca
ccaaatgagccaaggacgactgtgcctttaccaagggagccttgtagtcatttgaagacc
agttgtgaggaacagataagaagaaagccagatcagtgggcacagtaccatacccagaaa
gcacctgtctcttcaactcttcctgtggcaacacagtcaccaacaccaccttctctattc
agtgtagacttccgaacagatttctctgagagtgtgagtggcacaaaatttgaggaagac
catctttcccattattctccctggtcttgtggcaccataggctcttgtataaatgccatt
gattcagagcccaaagacgtaattgctaattcaaatgctgtgctaatggacctggacagt
ggggatgttaagagaagagttcatttatttgaaactcagagaaggacaaaagaagaagac
ccaattattccctttagtgatggaccaattatctcaaaatggggtgcaatttcccgatcc
tcccgaacaggttaccatacaacagatcctgtccaggcaactgcttcccaaggaagtact
actaagcccatcagtgtatcagattatgtcccttatgtcaatgctgttgattcaaggtgg
agttcatatggaaatgaggccacatcatcagcacactatattgatcgggacagattcatt
gttactgatttatctggtcatagaaagcattccagtactggagaccttttgagcattgaa
cttcagcaggccaagagtaactcattacttcttcagagggaagctaatgctctggccatg
caacagaagtggaattctctggatgaaggccgacatcttactttaaatcttctaagcaag
gaaattgaactgagaaatggagagagtgattatacagaagacatagtagatacaaagccc
gatagagatattgagttagagctttcagcacttgacactgatgaacctgatggacaaagt
gaacaaattgaagaaatcctggacatacaacttggtatcagttctcaaaatgatcagttg
ctgaatggaacagcagtggaaaatggccatcctggccagcaacagcagaaggacccagta
aagcagaagagacagagtttaggtgaagaccgtgtaactctggaggaacaaaaaacaatt
ctgccagtaacgtcttgctttaaccagccactcccagtatctattagcagtgcaggctgc
ctccccatcactacatctgtcagtgttggcaatctcatcctgaaaactcatgttatgtct
gaagataaaaacgactttttaaaacctattgcaaatgggaagatggttaacagctga
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