KEGG   Arvicola amphibius (Eurasian water vole): 119818907
Entry
119818907         CDS       T08327                                 
Symbol
Rxra
Name
(RefSeq) retinoic acid receptor RXR-alpha isoform X1
  KO
K08524  retinoid X receptor alpha
Organism
aamp  Arvicola amphibius (Eurasian water vole)
Pathway
aamp03320  PPAR signaling pathway
aamp04148  Efferocytosis
aamp04151  PI3K-Akt signaling pathway
aamp04659  Th17 cell differentiation
aamp04919  Thyroid hormone signaling pathway
aamp04920  Adipocytokine signaling pathway
aamp04928  Parathyroid hormone synthesis, secretion and action
aamp04932  Non-alcoholic fatty liver disease
aamp04976  Bile secretion
aamp05160  Hepatitis C
aamp05200  Pathways in cancer
aamp05202  Transcriptional misregulation in cancer
aamp05207  Chemical carcinogenesis - receptor activation
aamp05216  Thyroid cancer
aamp05222  Small cell lung cancer
aamp05223  Non-small cell lung cancer
aamp05226  Gastric cancer
aamp05417  Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:aamp00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    119818907 (Rxra)
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    119818907 (Rxra)
 09150 Organismal Systems
  09151 Immune system
   04659 Th17 cell differentiation
    119818907 (Rxra)
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    119818907 (Rxra)
   03320 PPAR signaling pathway
    119818907 (Rxra)
   04919 Thyroid hormone signaling pathway
    119818907 (Rxra)
   04928 Parathyroid hormone synthesis, secretion and action
    119818907 (Rxra)
  09154 Digestive system
   04976 Bile secretion
    119818907 (Rxra)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    119818907 (Rxra)
   05202 Transcriptional misregulation in cancer
    119818907 (Rxra)
   05207 Chemical carcinogenesis - receptor activation
    119818907 (Rxra)
  09162 Cancer: specific types
   05226 Gastric cancer
    119818907 (Rxra)
   05216 Thyroid cancer
    119818907 (Rxra)
   05222 Small cell lung cancer
    119818907 (Rxra)
   05223 Non-small cell lung cancer
    119818907 (Rxra)
  09172 Infectious disease: viral
   05160 Hepatitis C
    119818907 (Rxra)
  09166 Cardiovascular disease
   05417 Lipid and atherosclerosis
    119818907 (Rxra)
  09167 Endocrine and metabolic disease
   04932 Non-alcoholic fatty liver disease
    119818907 (Rxra)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:aamp03000]
    119818907 (Rxra)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:aamp03310]
    119818907 (Rxra)
Transcription factors [BR:aamp03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    119818907 (Rxra)
Nuclear receptors [BR:aamp03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   119818907 (Rxra)
SSDB
Motif
Pfam: Hormone_recep Nuc_recep-AF1 zf-C4 tRNA_bind_3
Other DBs
NCBI-GeneID: 119818907
NCBI-ProteinID: XP_038192694
LinkDB
Position
7:45523553..45611492
AA seq 439 aa
MAAPSLHPSLGPGIGSPLGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTP
TLGFGTGSPQLNSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSS
GKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKRE
AVQEERQRGKDRNENEVESTSSANEDMPVEKILEAELAVEPKTETYVEANMGLNPSSPND
PVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG
ILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGL
SNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG
DTPIDTFLMEMLEAPHQTT
NT seq 1320 nt   +upstreamnt  +downstreamnt
atggctgccccctcgctgcacccctccttgggtccaggaatcggctctccactgggctcc
cctgggcaactgcactcacctatcagcaccctgagctctcccatcaatggcatgggccca
cccttctctgtcatcagctcccctatgggcccgcactccatgtcggtacccaccacaccc
acactgggctttgggactggtagcccccagctcaactcacccatgaaccctgtgagcagc
agtgaggacatcaaacccccgctgggcctcaatggcgtcctcaaggttcctgcccatccc
tcaggaaatatggcatccttcaccaagcacatctgtgctatctgtggggaccgctcctca
ggcaagcactatggggtgtacagttgcgagggctgcaagggcttcttcaagaggacagta
cgcaaagacctgacctacacctgccgtgacaacaaggactgcctgattgacaagaggcag
agaaaccggtgtcagtattgccgctaccagaagtgcctggccatgggcatgaagcgggaa
gccgtgcaggaggaacggcagagaggcaaggaccggaatgagaatgaggtggagtccacc
agcagtgccaatgaagacatgcctgtggagaagattctggaagccgagcttgctgttgag
cccaagactgagacatatgtggaggcaaacatggggctgaaccccagctcaccaaatgac
cccgttaccaacatctgccaagcggcagacaagcagcttttcactcttgtggagtgggcc
aagaggatcccgcacttctctgagctgcctctggacgaccaggtcatccttctacgggca
ggctggaacgagctgcttattgcctccttttcccaccgttccatagctgtgaaagatggg
atcctccttgccactggcctgcacgtacaccggaacagcgctcacagtgctggggtgggc
gccatctttgacagggtgctaacggagctggtgtctaagatgcgtgacatgcagatggac
aagacggagctgggctgcctgcgtgccattgtcctcttcaaccctgattccaaggggctt
tcaaaccctgccgaggtggaggcgctgagggagaaggtgtacgcatcactagaggcatat
tgcaaacacaagtatccggagcagccaggcaggttcgccaagctgctgcttcgcctgccc
gcactgcgctccatcgggctcaagtgcctggagcacctgttctttttcaagctcatcggg
gacacacccattgacaccttccttatggagatgctggaggccccacatcaaaccacctag

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