Arvicola amphibius (Eurasian water vole): 119819532
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Entry
119819532 CDS
T08327
Symbol
Nup188
Name
(RefSeq) nucleoporin NUP188 isoform X1
KO
K14311
nuclear pore complex protein Nup188
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03013
Nucleocytoplasmic transport
aamp05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119819532 (Nup188)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
119819532 (Nup188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamp03019
]
119819532 (Nup188)
Messenger RNA biogenesis [BR:
aamp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
119819532 (Nup188)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
HEAT_SCC3-SA
Motif
Other DBs
NCBI-GeneID:
119819532
NCBI-ProteinID:
XP_038193698
LinkDB
All DBs
Position
7:48182099..48239665
Genome browser
AA seq
1765 aa
AA seq
DB search
MDYHICICSTGIITYLVHARSSRELWTILLGRSALRELNQIEAELNKYWQRLLEGLSYYK
PPSSSSAERVKANKDVASPLKELGLRVSKFLGLDEEQSVQLLQCYLQEDYRGTRDSLKTV
LQDERQSQALTLKIADYYYEERTCILRCVLHLLTYFQDERHPYRAEYADCVDKLEKELVV
KYRQQFEELYRMEAPTWETHGNLMTERQVSRWFVQCLREQSMLLEIIFLYYAYFEMAPSD
LLVLTKMFKEQGFGSRQTNRHLVDETMDPFVDRIGYFSALILVEGMDIESLHKYALDDRR
ELHQFAQDGLICQDMDRVMLTLGDIPHHAPVLLAWALLRHTLNPEETSSVIRKIGGTAIQ
LSVFQYLTRLLRSLASGGNDCTTSTACMCVYGLLSFALTSLELHTLGNQQDVIDTACEVL
ADPSLPELFWGTEPTSGLGIILDSVCGMFPHLLSPLLQLLRALVSGKSTAKKVYSFLDKM
SFYNELHKHKPHDVLSHEDGTLWRRQTPKLLYPLGGQTNLRIPQGTVGQVMLDDRAYLVR
WEYSYSSWTLFTCEIEMLLHVVSTADVIQHCQRVKPIIDLVHKVISTDLSIADCLLPITS
RIYMLLQRLTTVISPPVNVIASCVNCLTVLAARNPAKVWTDLRHTGFLPFVAHPVSNMTQ
MISAEGMNAGGYGNLLMNSEQPQGEYGVTVAFLRLVTTLVKGQLGSTQSQGLVPCVMFVL
KEMLPSYHKWRYNSHGVRELIGCLILELIHAILNLCQETDLHSSHTPSLPSLCICSLAYT
EAGQTVISIMGIGVDTIDMVMAAQPRSDGPEGQGQGQLLIKTVKLAFSVTNNVIRLKPPS
NVVSPLEQALTQHGAHGNNLIAVLAKYIYHRHDPALPRLAIQLLKRLATVAPMSVYACLG
SDAAAIRDAFLTRLQSKIEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDGSNGSKEF
SLGVWSCLHVVLELIDSQQQDRYWCPPLLHRAAIAFLHALWQDRRDSAMLVLRTKPKFWE
NLTSPLFGTLSPPSETSEPSILETCALIMKIICLEIYYVVKGSLDQSLKDTLKKFSSEKR
FAYWSGYVKSLAVYMAETEGSSCTSLLEYQMLVSAWRMLLIIATSHADIMHLTDVAVRRQ
LFLDVLDGTKALLLVATSVNCLRLGSMMCTLLLVLLRQWKRELGAVDKILGPLTEVLEGV
LQADQQLMEKTKAKVFSAFITVLQMKEMRVSDIPQYSQLVLNVCETLQEEVIALFDQTRH
SLASGSAAEDKDSMETDDCPRPRHKDQRDGQVCVLGLHLAKELCEVDEDGDSWLQVTRRL
PILPTLLTTLEVSLRMKQNLHFTEAALHLLLTLARTQQGATAVAGAGITQSICLPLLSVY
QLSSNGTGQTPSTSRKSLDAPSWPGVYRLSISLMEQLLKTLRYNFLTEALDFVGVHQERT
LQCLNAVRTVQSLACLEEADHTVGFILQLSHFRKEWHFHLPQLMRDVQVNLGYLCQACTS
LLHSRKMLQHYLQNKNGDGLPSAVTPRVQRPATTTATTTVAAPSGCSSKQPVADTEASEQ
QALHTVQYGLLKILSRTLAALRHFTPDVCQILLDQSLDLAEYNFLFALSFTTPTFDSEVA
PSFGTLLATVNVALNMLGELDKKKESLTQAVGLSTQAEGTRTLKSLLMFTMENCFYLLIS
QAVRYLRDPAVHPRDKQRMKQELSSELSTLLSSLSRYFRRGTPSSPAAGVLPSPQGKATS
LSKASPESQEPLIQLVQAFVRHVQR
NT seq
5298 nt
NT seq
+upstream
nt +downstream
nt
atggattaccacatctgtatatgtagtactgggatcatcacttaccttgtacatgccagg
agcagtagagaactctggacaattctacttggaaggtcagctcttagagaactgaatcag
attgaggcagaactgaataaatattggcagcggttattagaagggctttcttactacaaa
cctcccagttcaagttcagctgaaagagtgaaagctaataaagatgtagcgtcaccactg
aaggaactgggcctacgagtcagcaagttcttgggtcttgatgaagagcagagtgtacag
ttactgcagtgttaccttcaggaggactacagggggactcgggactcactaaagactgtt
ctgcaagatgagagacagagccaggccttaaccctgaagattgcagattattattatgaa
gagagaacctgcattcttcgttgtgtcttacatcttctgacctatttccaggatgaacgg
catccctatagggctgaatatgcagactgtgttgacaaactggagaaggaactagttgta
aaatacagacagcaatttgaggagctgtatcgaatggaagcaccgacctgggagacgcat
ggcaatctaatgactgaacgccaggtgtctcgatggtttgttcagtgcctccgggagcaa
tccatgctgctagaaattattttcctctattacgcatacttcgagatggcacctagtgac
ctactggtactaaccaagatgttcaaggagcaaggattcggtagtaggcagaccaataga
cacctggtggatgaaaccatggatccttttgtagatcggattgggtacttcagtgccctt
atcctagttgaaggcatggatatcgagtccttgcacaagtacgccttggatgacaggaga
gagctgcaccagtttgctcaagatgggcttatttgtcaggatatggatcgtgtgatgttg
accttgggagacattccacatcatgcccctgtacttttggcctgggctctcctccgtcac
acactgaaccctgaagagaccagcagtgtgatcaggaagataggcggcacagccatccag
ctgagcgtgtttcagtacttgacgcgactgcttcggtccctggccagtgggggaaatgac
tgcaccacgagcaccgcttgcatgtgtgtctacggcctcctctccttcgcgctgacctca
ttggagctccacacgctgggcaatcagcaggatgtgattgacacagcgtgtgaagtcctg
gcagacccttctcttccggagctgttctggggaacagaaccaacctctggtcttggcatc
attctggacagtgtgtgtgggatgtttccccatctcctttccccacttctacaattgctg
cgagctctggtgtcaggaaagtccaccgccaaaaaggtatacagtttcctggataaaatg
tccttctacaatgaacttcataagcacaagccccacgatgtgctctctcatgaagatgga
actctctggcggaggcaaacacctaaactcctgtaccctctagggggtcagaccaacctt
cgaattcctcagggcaccgtgggccaagttatgctggatgatagggcttaccttgtacgc
tgggaatattcctacagtagctggactctcttcacctgtgagattgaaatgctactccac
gttgtctccacggcagatgtgatccagcattgccagcgggtgaaacctatcattgacttg
gttcacaaggtcattagcacagacttgtccatagcggactgtctgctgcccatcacatct
cgtatctacatgctactgcagcggttgacaacagtaatctcccctcctgtgaatgtcatt
gcttcttgcgtcaattgcttaactgtcttggctgctcggaatccagcaaaggtctggact
gatcttcgtcacacaggctttttgccatttgtggcccaccctgtctccaacatgactcag
atgattagtgcggagggaatgaatgctggagggtatggcaaccttctgatgaatagtgaa
cagccccagggcgaatatggagtcacagttgcctttctgcgcttggtcaccactcttgtc
aagggacagcttggtagtacccagagccaaggcctggtgccatgtgtgatgttcgtgctg
aaggagatgcttcccagctatcacaaatggcgctacaactctcatggtgtgcgggaactg
atcggttgcctaattctggagctgattcatgcaattctgaacctgtgccaagagacagac
ctgcatagcagccacacgcccagcctgccatccctctgcatctgcagcctggcatataca
gaagctggacagacagtcatcagtatcatggggattggtgtggacaccatagatatggtg
atggctgctcagccccgcagtgatgggccagaaggtcagggccagggtcaactgctgatc
aagacagtgaagctggcattctctgtcaccaacaatgttattcgactgaaacctccttct
aatgtggtgtcccccctggaacaggctctgacacaacatggtgcccacggcaacaacctc
attgctgtcctagccaagtacatctaccacagacatgacccagctttgcctcgcctggcc
atccagctgctgaaacgtctggccacggtggccccaatgtcagtgtatgcctgcctgggc
agtgatgcagctgccattcgtgatgccttcctgacccgccttcagagcaagattgaggac
atgcgcatcaaagtcatgattctggagttccttacggtcgctgtggagacgcagccaggt
ctcatcgagctctttctgaatctggaagtgaaggatggcagcaatggctctaaggaattc
agccttggtgtgtggagctgtctccatgtggtgctggagttgattgattcccagcaacaa
gatcgatactggtgcccacccctcttgcatcgagcagccattgccttccttcatgccctg
tggcaagatcgtagggacagtgctatgcttgtcctcagaaccaaacccaagttttgggag
aatttaaccagcccgctgtttggaactctttctcctccctcagagacatctgagcccagc
attctggagacctgtgccctaatcatgaagataatatgtttggagatatactacgtagtt
aagggttcattagaccagtctttaaaagatacactcaagaagttttccagcgagaaacgc
tttgcctactggtcagggtatgtcaagtctttggcagtgtacatggctgaaacagagggc
agcagctgcacgtccttgctggagtatcagatgctggtctctgcctggaggatgcttctc
atcattgccaccagtcatgccgacatcatgcacttgactgatgtggcagtgcggcgccag
ctttttcttgatgtgcttgatgggaccaaggcattactcctcgttgcaacatcagtgaac
tgcctccggctcggctccatgatgtgtacactgctgctcgtcctcctgcggcagtggaag
cgagagctgggtgctgtggataaaatccttgggcccttgacagaggtcctggaaggggtg
ctgcaggcagaccagcagctcatggagaagaccaaggccaaggtgttctctgccttcatc
acggtattacagatgaaggagatgcgagtaagtgatatcccgcagtactcccagctggtg
ctgaatgtctgtgagactctccaagaagaggtgattgcactctttgatcagacccgccac
agcctggcatcaggcagtgctgcagaggacaaggacagcatggaaacagatgactgccct
cggcctcggcataaggaccagcgtgatgggcaggtatgtgtcctgggactgcatctggct
aaggagctttgtgaggtggatgaggatggggactcgtggctacaggtgacccgaaggctc
cccattctgcccacactcctcaccaccctggaggtgagcctccgcatgaagcagaacctg
cattttactgaggctgcgttgcacctgctcctcaccctggctcgtacccagcagggagcc
acagcagtggctggagctggcatcacccaaagcatctgtttgcccctcttgagtgtgtac
cagcttagcagcaatggcacaggacagacacccagcacctctcgaaagtccctggatgcc
ccatcctggccaggggtctaccgcctgtccatatccttgatggagcagttgcttaagact
ctacgctacaatttcctgactgaggctctggactttgtgggtgtccatcaggagcggaca
ttgcagtgtctcaatgcagtgaggacggtacagagtctagcctgcctggaggaagcagat
cacactgtgggcttcatcctacaactatcccatttcaggaaggagtggcacttccacctg
cctcagcttatgcgtgatgtccaggtgaacctgggttatttgtgccaggcctgtacctcc
ctcctacatagccgcaagatgctacagcactacctacagaacaaaaatggggatggcctc
ccctcagctgtcactcctcgagttcagaggccagccactaccacggccaccaccacagtt
gctgccccatctggctgctcctctaagcagcctgtggctgacactgaggcctcagagcag
caagccttacacacagtccagtatggccttctcaagattctcagcaggaccctggcagcc
ctgcgccacttcactccagatgtctgccagattctgctggaccagtccctggatctcgca
gaatacaacttcctatttgccctgagtttcaccactcccacttttgactctgaagtggcc
ccctcctttggaaccctcttggccacagtgaacgtggccctcaacatgcttggagagctg
gacaagaaaaaagaatcccttactcaggctgtgggactcagcacacaagcagaaggaacc
cgaacattaaagtccctcctgatgttcaccatggagaactgcttctatctgctcatctcc
caagcagtacgctacctcagggatccggctgtgcacccgcgggacaagcagcgaatgaaa
caggagctgagctcagagctgagcacgctgctttccagcctctcaagatacttcagaagg
ggaacccccagctcccctgctgctggagtcctgccctcgccacagggcaaggccacctct
ctctccaaagccagcccagagtctcaggagcctctgatccagcttgtgcaagcctttgtc
cggcatgtgcagagatag
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integrated database retrieval system
