Arvicola amphibius (Eurasian water vole): 119820455
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Entry
119820455 CDS
T08327
Symbol
Atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp04136
Autophagy - other
aamp04140
Autophagy - animal
aamp04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
119820455 (Atg16l1)
04136 Autophagy - other
119820455 (Atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
119820455 (Atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
aamp04131
]
119820455 (Atg16l1)
03029 Mitochondrial biogenesis [BR:
aamp03029
]
119820455 (Atg16l1)
Membrane trafficking [BR:
aamp04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
119820455 (Atg16l1)
Others
Specific organelles associated proteins
Auto phagosome
119820455 (Atg16l1)
Mitochondrial biogenesis [BR:
aamp03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
119820455 (Atg16l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG16
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_EIPR1
WDR90_beta-prop_4th
WD40_RFWD3
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
eIF2A
NBCH_WD40
Beta-prop_DCAF12
Beta-prop_IFT140_1st
KASH_CCD
ZapB
APEH_N
TolB_like
CCDC93_CC
Img2
Motif
Other DBs
NCBI-GeneID:
119820455
NCBI-ProteinID:
XP_038194732
LinkDB
All DBs
Position
8:complement(104260556..104294841)
Genome browser
AA seq
607 aa
AA seq
DB search
MSSGLRAADFPRWKRHIAEELRRRDRLQRQAFEEIILQYTKLLEKSDLHSVLAQKLQAEK
HDIPNRHEISPGHDGAWSDSQLQEMAQLRIKHQEELTELHKKRGELAQLVIDLNNQMQQK
DREMQVNEAKIAECLQTISNLETECQDLRTKLQDLELANQTLKDEYDALQITFTALEEKL
RKTTEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEQDDDI
EVIVDETSDHTEETSPVRAISRAATKRLSQPAGGLLDSITNIFGRRSVSSIPAPQDNVDT
HPASGKDVRVPTTAMYVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEAFGDKCELKG
SLTGSNAGITSIEFDSAGAYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDN
ARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSES
VVREMELLGKITALDLNPERTELLSCSRDDLLKVIDLRTNTVKQTFSAPGFKCGSDWTRV
VFSPDGSYVTAGSAEGSLYVWSVLTGKVEKVLSKQHSSSINAVAWAPSGLHVVSVDKGSK
AVLWAQP
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgggcctccgcgccgcagactttccccgctggaagcgccacatcgcggaggaa
ctgaggcgccgggaccggctgcagaggcaggcattcgaggagatcatcctgcagtatacc
aagttgctggaaaagtcagatcttcattcagtattggcccagaaactacaagctgaaaag
catgacataccaaataggcacgagataagtcctggacatgatggtgcatggagtgacagt
cagctacaagaaatggcccagttgaggatcaaacaccaggaagaactgacagaactgcat
aagaaacgtggggagttagctcagttggtgattgacctgaataaccaaatgcagcagaag
gacagggagatgcaggtgaatgaagcaaaaattgcagagtgtttacagaccatctctaac
ctggagacggaatgccaggacctgcgcaccaaattgcaggacctggagctagccaaccag
accctgaaggatgagtatgatgccctgcagattactttcactgctctagaggagaaactg
aggaaaactactgaggaaaaccaggagctggtcaccaggtggatggctgagaaggcccag
gaagcaaatcgcctcaatgcagaaaatgagaaggactccaggaggcggcaagcacggctg
cagaaagagcttgcagaggcagcaaaggaacccttgcctgttgaacaggatgatgacatt
gaagtcattgtggatgagacctcagatcacactgaagagacctctcctgtgcgagccatc
agcagagcagctactaagcgactctcgcagcctgctggaggccttctggattctatcact
aatatctttgggagacgctctgtctcttccatcccagcccctcaggataatgtggacact
catcctgcttctggtaaagatgtgagagtcccaactactgccatgtatgtgtttgatgca
catgatggggaagtcaatgcagtgcagttcagtccaggttcccggttactggctactgga
ggcatggaccggagggttaaactttgggaagcatttggagataaatgtgaattaaagggt
tccttgactggcagtaacgcagggattacaagcattgaatttgatagtgctggagcttac
ctcttagcagcttcaaatgattttgcaagtcgaatctggactgtggatgattatcgatta
aggcacacactcacaggccacagtgggaaagtgctctctgccaagttcctgctggacaat
gctcggatagtctcaggaagtcacgaccggaccctcaaactctgggatctacgcagcaaa
gtctgcataaagacagtgtttgcaggatccagctgcaatgacattgtttgcactgagcaa
tgtgtaatgagtggacattttgacaagaaaattcgtttctgggatatacgatcagagagt
gtggtccgagaaatggaactgttggggaagatcactgctctggacttaaaccccgagaga
actgagctcctgagctgttcccgtgatgacctgctgaaagtcattgacctccggacaaat
actgtcaagcagacgttcagtgcccctggcttcaaatgtggctctgactggacccgagtt
gtcttcagccctgatggcagttatgtgacagcaggctcagccgaggggtctctgtatgtc
tggagtgtgctcacagggaaagtggagaaggttctttcaaaacagcacagctcctccata
aatgcagtggcctgggccccctcgggtttgcatgttgtcagcgtggacaaaggaagcaaa
gctgtgttgtgggcacaaccttga
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