Arvicola amphibius (Eurasian water vole): 119820477
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Entry
119820477 CDS
T08327
Symbol
Supt5h
Name
(RefSeq) LOW QUALITY PROTEIN: transcription elongation factor SPT5
KO
K15172
transcription elongation factor SPT5
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
119820477 (Supt5h)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aamp03021
]
119820477 (Supt5h)
03019 Messenger RNA biogenesis [BR:
aamp03019
]
119820477 (Supt5h)
Transcription machinery [BR:
aamp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
119820477 (Supt5h)
RNA polymerase I system
119820477 (Supt5h)
Messenger RNA biogenesis [BR:
aamp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
119820477 (Supt5h)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW2_Spt5
KOW5_SPT5
Spt5-NGN
KOW6_SPT5
KOW7_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF3912
Ribonuc_P_40
Motif
Other DBs
NCBI-GeneID:
119820477
NCBI-ProteinID:
XP_038194775
LinkDB
All DBs
Position
8:complement(77718614..77746150)
Genome browser
AA seq
1085 aa
AA seq
DB search
MSDSEDSNFSEEEDSERSSEAEEAEAEDERRSAAGSEKEEEPEEEEEEEEEEYDEEEEEE
DDDRPPKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKEEIEASNIDNVVLDEDRSG
ARRLQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLWT
VKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEG
VGNLRLGYWNQQMVPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQN
TISLKMIPRIDYDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLIF
EGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTEGTGKEREHNFQ
PGDNVEVCEGELINLQGKVLSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVI
AGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQ
LDPRTVGVIVRLERETFQVLNMHGKWXPSGNQAVTQKKDNRFAVALDSDQNNIHVKDIVK
VIDGPHSVREGEIRHLYRSFAFLHCKKLVENGGMFVCKGTGTWCWPVGSKPRDVTNLTVG
GFTPMSPRISSPMHPSGEGQHGGFGSPGGGMSRGRGRRDNELIGQTVRISQGPYKGYIGV
VKDATESTARVELHSTCQTISVDRQRLTTVDSQRPGGMTSTYGRTPMYGSQTPMYGSGSR
TPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAFDDE
PTPSPQAYGGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQ
PSPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGY
NPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCSVYLKDSEKVV
SISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIIRMDLEDQQIKILNLRFLG
KLLEA
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacagcgaagacagcaacttctccgaggaggaggacagcgagcgcagcagcgag
gcggaggaggccgaggcagaggatgaacgacggagtgcagcaggcagtgagaaggaggag
gagcctgaggaagaggaggaggaggaagaagaggaatacgatgaggaagaggaagaggaa
gatgatgaccggcccccgaagaaaccacgccatgggggcttcattttggatgaggctgat
gtagatgatgagtatgaggatgaggaccagtgggaagatggagcagaagacatcctggag
aaagaagagattgaagcctccaacattgataatgttgtcctggatgaagaccgctctggg
gctcgtcgtctgcagaatctctggagggaccagagagaagaggaactgggcgagtattat
atgaagaaatatgcaaaatcatctgtgggagagacggtgtatggagggtctgatgagctc
tcagacgacatcacccagcagcagctgctcccgggagtcaaggaccccaacctgtggact
gtcaagtgtaagattggtgaggaacgagccacagcaatttccttgatgcgcaaattcatc
gcttaccagttcacagacacacccctgcagattaagtcagtggttgctccagagcacgtg
aagggctacatctacgtggaggcctacaagcaaacccatgtgaagcaggccattgagggt
gtgggcaacctgcggcttggctactggaaccagcagatggtgcctatcaaggaaatgact
gatgtgctcaaggtggtgaaggaggtggccaacctgaagccaaagtcctgggtccgcctc
aagcgaggcatctacaaagacgacattgctcaggtggactacgttgagcccagccagaac
accatttccctcaagatgatcccacgcatcgactatgaccgcatcaaagcccgcatgagc
ttgaaagactggtttgccaaaaggaagaagttcaagcggcctccacagaggctttttgat
gctgagaagatcaggtctttggggggtgatgttgcctctgatggtgacttcctcatcttc
gaggggaaccgctacagtcggaagggcttcctgttcaagagcttcgccatgtctgctgtg
attacagagggtgtgaagcccaccctatcagaactggaaaagtttgaagatcagcctgag
ggtatcgacctggaggtggtgactgaaggcacagggaaggagcgggagcacaatttccag
cctggggacaatgtggaggtgtgcgagggtgagctcatcaacttgcaaggcaaggttctc
agtgtggacggcaacaagattaccataatgcccaagcatgaggacctcaaggacatgctt
gagttcccagcccaggaacttcggaagtacttcaagatgggggaccatgtaaaagtgatt
gctggccgatttgagggtgatacaggtctcattgtgagggtggaggagaactttgtcatt
ctcttctcagacctcaccatgcatgagttgaaggtgcttccccgggacctgcagctctgc
tcagagacagcctcaggtgtggatgttgggggccagcatgagtggggtgagctggtacaa
ctggatccccgcactgtgggtgtcatcgtgcggctagagcgagaaaccttccaggttctg
aacatgcatgggaagtggtgaccgtcaggcaaccaggctgtgactcagaaaaaggacaac
cgctttgcagtggccctggactcagatcagaacaatattcatgtgaaggacattgtcaag
gtcattgatggccctcactcagtaagagagggggagatccgccatctttatcgcagcttt
gctttcctgcattgcaagaagctagtagagaatggtggaatgtttgtctgtaagggcacg
ggcacctggtgttggccggtgggttcaaagccccgggatgtgaccaatttaactgttggt
ggcttcactcctatgagcccccggatcagcagccccatgcaccccagtggtgaaggccag
catggtggctttggtagcccaggtggtggcatgagcaggggtcgagggcgaagagataac
gagctcataggccagactgtgcgtatctcccagggaccctataaaggctacattggtgtg
gtgaaggatgccacggagtccacagcccgagtggagctgcactcaacctgccagactatc
tctgtagaccgccagcggctcaccacggtcgactcccaacgtccaggtggcatgacctcc
acctatggacggacacccatgtatggctctcagacacccatgtacggctctggttctcga
acacccatgtatggctcccagacacctttgcaggatgggagccgtactccacattatggc
tctcagacgcccctgcatgatggtagccgcactcctgctcagagtggagcctgggacccc
aacaacccgaacacaccttccagggctgaggaggaatacgagtatgcctttgacgacgag
cccaccccatccccacaggcatatgggggaaccccgaatccccaaacacccggctaccca
gacccatcatccccccaggtcaatccacagtacaacccgcagacaccagggacgccagcc
atgtacaacacagaccagttctccccctacgctgccccttctcctcaggggtcctaccag
cccagccccagtccccagagctaccaccaagtggcaccaagcccagcaggctatcagaac
acccattccccggccagctaccaccccacaccttcaccaatggcctatcaggcaagtccc
agccccagccctgttggctacagtccgatgacccctggagctccttctcctggaggttac
aacccacatacgccaggctcaggcattgagcagaactccagtgactgggtgaccactgat
atccaggtgaaggtgcgagacacctatctggacacacaagtagtggggcagacgggtgtc
atccgcagtgtcacgggaggcatgtgctccgtgtacctgaaagacagtgagaaggttgtc
agcatttccagtgagcacctggagcccatcacccccaccaagaacaacaaggtgaaagtg
attctgggtgaggaccgagaggccaccggggtcctactgagtattgatggtgaggatggc
atcatccgaatggacctagaagaccaacagattaagatcctgaacctccgcttcctaggg
aagctcctggaggcctga
DBGET
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