Arvicola amphibius (Eurasian water vole): 119820480
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Entry
119820480 CDS
T08327
Symbol
Scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aamp03021
]
119820480 (Scaf8)
03041 Spliceosome [BR:
aamp03041
]
119820480 (Scaf8)
Transcription machinery [BR:
aamp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119820480 (Scaf8)
Spliceosome [BR:
aamp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
119820480 (Scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
DUF3525
Motif
Other DBs
NCBI-GeneID:
119820480
NCBI-ProteinID:
XP_038194780
LinkDB
All DBs
Position
8:complement(12533430..12725911)
Genome browser
AA seq
1290 aa
AA seq
DB search
MEAVKTFNSEGCASTPACTDCFSSSMDTRSILYSLNDYKPPISKAKMTQITKAAIKAIKF
YKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNL
YRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAGIPPPVVTPVLASTTAAMSNTPG
TPVTPVTPANVVQGLPDPWVSQITNTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQP
SILQALDAGLVVQLQALTAQLTAAAAAANSLTPLDQGVSFNKKLMDRFDFGEDSEHSEES
KKEIPTPQLSHVSESVNNSIFHQIAEQLQQQNLEHLRQQLLEQQQPQKVTPQDSQEGTFG
SEHSASPSQGSSQQHFLEPEANLDDSIDIQQQDMDIDEGQDVVEEEIFEPEAKKVAVRSR
SRTHSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKER
QKKGLPPVRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCM
VHRQDSFRALQKLSSGSYKIGSKVIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVD
DLDGFAEGGMIDQETVNAEWETVKASEPVKETVQTTQSPTPVEKETVATTQAEVFPPPVA
MLQIPVAPAVPAVSLVPPAFPVSMPVPPPGFSPIPPPPFLRASFNPSQPPPGFMPPPVPP
PVVPPPAIPPVVPTSLVQPPLSMTPENVKDVGFGSLVLPGGSVASNLAPSTLPAGNVFNP
PNKAEPEDKVPHLAEHQIPSGENTRPVIPNDIPSSAAMLAQPPGPANTSGILCVQRPNVS
SNSEILGVRPANVSSSAAIIGAQPPNILNNSGILGMQPPNVSSGSGLLGVLPPNLPNNSG
LVGLQPPNVTNPAGLLGTQPPIGPQNLPPLTIPAQRMPALPMLDIRPGLIPQAPGPRFPL
LQPGIPPQRGIPPPSVLDAPLHPPPRGPFPPGDLFSQPERPFLAPGRPSLDNVPNPDKRI
PLGNDSIQQEGDRDYRFPPVETREGITRPPPVDVRDVVGRPVDPREGPGRPPLDGRDHFG
RPPVDMRENLVRPGLDHLGRRDHFGFPPEKPWGHRDFDEREHRVLPVFGGPKGLHEERGR
FRPGNYRFDPRSGPWNRGFGQEVHRDFDDRRRPWERQRDRDDRDFDFCREMNGNRLGRDR
IQNTWVPPPHARVFDYFEGATSQRKGDNVPQVNGENTERHVQPPPLPVQKDPELYDKLAS
AGDVDKEESGTVADVESEAVVVESTETEGT
NT seq
3873 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtgaagaccttcaacagcgagggttgtgcctctactcctgcttgtacagac
tgcttttccagcagcatggacacaagaagcatattatattcactgaatgactataaacca
cccatttctaaagcgaaaatgacccagattacaaaggcagccatcaaagctattaagttc
tataaacacgtggtacaaagtgttgagaaattcattcagaagtgtaaaccagaatacaag
gtacctggactatatgttattgactccattgtgcgacaatcccggcatcagtttggccaa
gaaaaggatgtgtttgcacccagatttagtaataacatcattagcactttccagaattta
tatcgttgccctggggatgacaagagtaaaatagtgagagtattaaacttatggcagaag
aataatgtttttaagagtgagattatccagcctcttctggatatggcagcaggaattcct
cctccagttgtcacccctgttttggccagcaccactgcagccatgagcaatactccagga
acccctgtgacacctgttactccagccaatgtggttcaaggcttacctgatccatgggta
tctcagataacaaacacggacacattggcagctgttgctcagatcttacaaagtcctcaa
ggtcagcagcttcagcagctaatacaaaccttacagatccaacagcagaagccccagcct
tccatcctacaggccttggatgctggtcttgtggttcagttgcaggcacttacagcgcag
cttacagctgcagctgcggcggccaactcgcttacacccttggatcagggagtctctttc
aacaagaagttgatggacaggtttgactttggggaagattctgagcacagtgaagaatcc
aaaaaggagattcctactcctcaactttctcatgtttctgaatctgtgaacaactccatc
ttccatcagatagcagagcagctgcagcagcagaacctggagcacctgcggcagcagctt
ttggagcagcagcagccccagaaggtaactcctcaggatagccaggagggaacatttggg
tcagaacactcagcttcaccctcacaaggaagtagccaacagcattttctggaacctgaa
gctaatttggatgattctatagacattcagcaacaggatatggatattgatgaaggacaa
gatgttgttgaagaggagatctttgaaccagaagctaagaaagtagctgttcgctcaaga
tcaagaactcattcgcgatctcgatcaagatcaccaagaaaacgaaggtccaggtcgcga
tctggatctcgaaagcgaaaacacaggaagcgatcccgctcccgctcaagagaaagaaag
agaaaatcatcaaggtcgtattcaagtgaaagaagagccagagagagggagaaagaacgc
cagaaaaagggcttgcctcctgttcggtcaaaaactctaagtgtatgcagcactaccctt
tgggttggccaagtggataagaaggctacacagcaagatttaaccaacctttttgaggag
tttggacagattgaatctattaatatgattccaccgaggggctgtgcatatgtctgtatg
gttcaccgacaagattcatttcgggctcttcagaaactgagttcaggatcctataaaatt
ggttccaaggtcatcaagattgcctgggctttgaacaaaggtgtaaagacggaatacaaa
cagttctgggatgtagatcttggagtcacatatataccctgggaaaaagttaaagtggat
gatttggatggttttgcagaaggaggcatgatagatcaggaaactgtaaatgctgaatgg
gaaactgtgaaagcctcagaacccgttaaagaaacggtccagactacacagagtccaact
ccagttgagaaggagacagtggccacaacacaagcagaggttttccctccccctgtggcc
atgctgcagattccagtagcaccagcggttcctgcagttagtttagttccaccagcgttt
cctgtgtcaatgccggtcccccctcctggattcagcccaatccctccacctcctttccta
cgagcaagttttaacccttcacagccacctcctggttttatgccacctccggttccccca
cctgtggtacctccccctgcaattccaccagtagtaccaacatctttagtgcaaccacca
ttgtccatgaccccagaaaatgtgaaagatgttggatttggtagccttgtcttaccaggt
ggttctgttgccagcaatcttgctccttcaactcttccagctggaaatgtttttaatcct
cccaataaagcagagcctgaagacaaagtacctcaccttgcagaacaccagattccttct
ggtgagaacaccagaccagtgattccaaatgatattcccagtagtgctgcaatgctagca
cagccacctggccctgcaaacacctctgggatcctgtgcgtgcagagaccaaatgtgtca
agtaattctgaaattctgggggttcggccagctaatgtttccagtagtgctgcaattatc
ggagcacagccaccaaatattctaaataactctggaattttgggcatgcagccaccaaat
gtgtcgagtggctctggacttcttggagttctgcctccaaatttgcctaacaactctgga
cttgtaggactacagccaccaaatgttacaaatcctgctggacttttgggaacacaacca
ccgattggacctcaaaatttacctcccttaactatcccagctcaaaggatgcctgcattg
ccaatgttggatatccgtccaggactaataccacaggctcctggaccaagattcccttta
ctacagcctggaattcccccacaacggggtatccctcccccatcggtacttgatgcacct
cttcatccgccaccccgtggaccttttcctccaggagatcttttcagtcagccagaaaga
ccttttctggctcctggaagaccaagtctagacaatgttcccaacccagataagcgaata
ccacttgggaatgacagtattcagcaggaaggggatagagactaccggtttcctcctgta
gaaacaagggagggcattactagacctcccccagtggatgttagggatgttgttgggcga
cctgtagaccccagagaaggtcctggaaggcctccattagatggtagggatcactttgga
agacctcctgtggacatgagagagaatcttgtgagaccaggtctagatcatcttggtaga
agagatcactttggctttcccccagagaaaccttgggggcatagagattttgatgagaga
gagcatcgagttttgcctgtctttggtggtccaaaaggcttgcatgaagagagaggtaga
tttcggcctggaaattaccgatttgatcctagaagtggtccttggaacaggggatttgga
caagaagttcacagagatttcgatgaccgcagaagaccctgggagaggcaaagggatagg
gatgacagagattttgatttctgcagagaaatgaatggaaatcgtcttggacgagataga
attcaaaacacttgggtcccccctcctcatgctcgggtttttgattatttcgaaggggcc
acttctcaacgaaaaggcgataatgtgcctcaagttaacggtgaaaatacagagagacat
gttcagccaccgcccttaccagtacagaaggaccctgaactctatgacaaactggcatct
gcaggtgacgtagacaaggaggagagcggcacagttgctgatgtagaaagtgaagcagtg
gtggtagagagcacagagactgaggggacataa
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