Arvicola amphibius (Eurasian water vole): 119820836
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Entry
119820836 CDS
T08327
Symbol
Col4a3
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-3(IV) chain
KO
K06237
collagen type IV alpha
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp04151
PI3K-Akt signaling pathway
aamp04510
Focal adhesion
aamp04512
ECM-receptor interaction
aamp04820
Cytoskeleton in muscle cells
aamp04926
Relaxin signaling pathway
aamp04933
AGE-RAGE signaling pathway in diabetic complications
aamp04974
Protein digestion and absorption
aamp05146
Amoebiasis
aamp05165
Human papillomavirus infection
aamp05200
Pathways in cancer
aamp05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
119820836 (Col4a3)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119820836 (Col4a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119820836 (Col4a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119820836 (Col4a3)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
119820836 (Col4a3)
09154 Digestive system
04974 Protein digestion and absorption
119820836 (Col4a3)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
119820836 (Col4a3)
09162 Cancer: specific types
05222 Small cell lung cancer
119820836 (Col4a3)
09172 Infectious disease: viral
05165 Human papillomavirus infection
119820836 (Col4a3)
09174 Infectious disease: parasitic
05146 Amoebiasis
119820836 (Col4a3)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
119820836 (Col4a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aamp04147
]
119820836 (Col4a3)
00536 Glycosaminoglycan binding proteins [BR:
aamp00536
]
119820836 (Col4a3)
Exosome [BR:
aamp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
119820836 (Col4a3)
Glycosaminoglycan binding proteins [BR:
aamp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119820836 (Col4a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
119820836
NCBI-ProteinID:
XP_038195401
LinkDB
All DBs
Position
8:complement(109155910..109287616)
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AA seq
1676 aa
AA seq
DB search
MHSESAPRFRVLLLPILLLLLATPPVVSKGCVCKGKGPCLCVGTKGEKGEKGCAGPPGLP
GQKGFPGPEGLPGPQGPKGSPGLPGLTGPKGIRGITGLPGFSGPPGLPGIPGHPGPPGLA
GLPGCNGSKGEQGFPGIPGTPGYSGLPGPAGLKGQKGEPAQGEDREFNGKGDPGLPGPPG
FQGFPGPPGFPGPAGLPGPPGDFGLPGAVGPRGPKGHMGDNAIGQKGERGVKGLTGPPGL
QGTVIVTLIHPNNTSDFKGEKGDMGEMGEPGHPGPLGPPGDSYGSEKGVPGEPGPRGKPG
KDGAPGFPGTEGAKGNRGFPGLRGEDGIKGWKGDIGSPGFPGPTEYYDAYLEKGDKGMPG
PPGPKGARGPQGPSGPPGVPGSPGLSRPGPRGPPGWPGLKGSKGERGPPGKGTMGPPGPL
GCPGSPGPPGPPGPPGRPGDIVFQPGPPGDHGVPGNIGPPGDPGIDGPKGEPGLPCTEVH
CIPGPPGLPGFPGLDGFKGIPGGRGAPGMKGNPGSPGSPGLPGFAGFPGDQGHPGLKGSK
GETPLPWGQMGDPGEPGLRGVPGRKGFDGIPGSPGAKGSPGPRGEPALSGRKGDQGPPGA
PGSPGPPGPPGPAGPPGYGPRGETGPKGTPGVPGAPGPPGEAGLKGEPGISTPVPGPPGP
PGLPGQAGRRGLPGLPGPVGKCEPGLPGPDGEPGLPGIGLPGPPGPKGDQGFPGTKGSPG
CPGEPGKPGRPGEPGHPGAKGEPALAKPGEPGKPGFPGERGNPGESGEIGLPGPPGLPGT
PGKDGPDGPPGDPGQPGPPGAKGIPGRCTQGPKGVQGLPGLNGLKGQPGRRGDMGPKGDP
GIPGLDRSGMPGEPGPPGMPGHPGEIGPPGRKGYPGDAGYPGPPGEKGEVGMMGYPGTTG
PPGSPGKPGSQGQRGSRGIAGIKGERGRPGSKGERGEKGNPATLQIPHLKGDKGEPGFKG
FVGNPGEKGDRGIPGLSGLKGFEGLPGPPGPPGKGPRGDVGHSGNPGEAGPGGMPGSMGN
MGVPGPKGRKGTLGLPGLAGRPGLPGSRGPXGDKGEQGHSEGARPGPQGPKGIPGDPGFS
RYDKGKKGERGPPGPPGQSGLAGPDGAPGSPGSRGHPGNPGPGGXFGSKGKKGCPGLPGS
TGPPAPQDSPGPPGPNGYERQQGHDGIPGPPGEKEKTRLAGAHPGPKGNPGVPGVKGDKG
APGLPGLPGRKGTMGDVGPQGPPGISGLPGPPGLPGAIVPGPKGNKGLPGPRGSPGKPGP
PGXPGLIIKGIKGDKGFLGLPGPKGLPGXVGDMGPQGHPGAPGTPGLPGLRGDPGFPGFP
GIKGEKGNPGFLGSIGHPGPTGPKGPPGERGKPGTRKIISLPGSPGPPGPPGQPGMKGDP
GSLGPPGIPGPCGPKGKPGKDGNPGSPGAAGGRGNKGSKGQQGPPGLDGLPGFKGKPGER
GTPASGTRMQGFVFTRHSQTTAIPSCPEGTQPLYSGFSLLFVQGNERAQGQDLGTLGSCL
QRFTTMPFLFCNINNVCHFASRNDYSYWLSTPALMPMDMAPITGRALEPYISRCVVCEGP
AMAIAVHSQTTAVPPCPRGWVSLWKGFSFVMFTSAGSEGAGQALASPGSCLEEFRASPFI
ECHGRGTCNYYSNSYSFWLASLSQERMFRKPIPSTVKAGDLEKIISRCQVCMKKRH
NT seq
5031 nt
NT seq
+upstream
nt +downstream
nt
atgcactcagagagtgctccaaggttccgggtactcctgcttcctatcctgctgctgctc
ctggccacaccgcctgtggttagcaagggctgtgtctgcaaaggaaagggcccgtgcctc
tgtgtggggaccaaaggggagaagggggagaaaggctgtgccgggccccctggtttacct
ggccagaaaggatttccaggtcctgaaggcttgcctggaccacagggacccaagggctct
ccaggacttccagggctcactggccccaaaggcatcaggggaataactggattaccagga
ttttcaggtcctcctggacttccaggcatcccaggccaccctgggcctcctgggctggct
ggtttaccaggatgcaatggttcgaagggtgagcaaggattcccaggcattccggggaca
ccaggctattcggggctcccaggtcctgctggtttgaaaggacaaaaaggtgagcctgct
caaggagaagacagggaattcaatggcaaaggtgaccctgggcttccagggcctccaggc
ttccagggttttccaggccccccaggttttccagggcctgccggtctacctggtcctccg
ggagattttggtcttccaggtgccgtgggacccagaggaccaaaaggtcatatgggcgat
aatgccataggacaaaaaggagaaaggggtgtgaaaggattgacaggacctcctggactg
caaggaacagtgattgtcacactcatccacccaaacaacacatcggactttaagggggag
aaaggagatatgggagagatgggtgaacctgggcatcctggacccttggggccacctgga
gactcctatggatcagaaaagggtgttcctggagagcctggtccaaggggaaaacctgga
aaagatggtgctcctggcttccctggcactgagggagccaaaggcaacaggggctttcct
gggttaaggggtgaagatggcattaagggatggaaaggagacattggctctccaggattc
ccgggtccaacagaatattatgacgcatacctggaaaagggagacaaaggaatgccaggc
ccacctgggcccaaaggtgctcgtggcccacagggtcctagtggtccccctggagttcct
ggaagccctggactgtcaaggcctggccccagaggacctcctggatggccaggcttgaaa
ggaagtaaaggggagagaggaccccctggaaaaggcaccatgggccctcctggacccctg
ggctgcccgggttcaccaggtccaccaggcccaccaggacctccaggacgtccaggtgac
attgtttttcagccgggaccacctggtgatcatggagtgccaggcaatataggacctcca
ggagacccaggaattgatgggccgaaaggagaaccgggccttccgtgcacagaggtccat
tgcatcccaggcccccctggtctccccggatttccaggattagatggtttcaaaggtatc
ccaggaggacgaggtgcccctggcatgaaaggaaacccagggtcccccggaagcccagga
ctcccaggatttgcaggattcccaggggaccaagggcacccaggactgaaaggaagcaaa
ggtgaaacacctctaccctgggggcaaatgggtgacccaggcgaacctgggctcagaggt
gtgccagggagaaagggcttcgatggaattcctggaagtccaggagcaaagggatcgcca
ggacctagaggtgaaccggccctgagtggaaggaaaggggaccagggacctccaggggct
cctggatcacctggacctccgggacccccaggaccagctggaccaccgggctatggacct
cgaggagaaacaggtccaaagggaacgccaggagttcctggagccccgggaccacctgga
gaagccggtcttaaaggagaaccaggcatatcaacaccagttccaggtcccccaggacct
ccagggctcccggggcaggccggtcggcgaggtctacctggtttgcctggacctgtggga
aaatgtgagcctggtcttcccggacctgatggtgaaccagggctcccaggaattggactt
cctgggcctccaggacctaagggagatcaaggtttcccaggaacaaaaggatcacctggt
tgtcctggggaaccgggaaagccaggccgtcctggagaaccaggccacccaggagccaag
ggagaaccagcactagccaagccgggggaacctggaaaacctggctttccaggagaaaga
ggcaatcctggggaaagtggagaaattggactccctgggcctccaggcctccctggaact
ccaggaaaggatggacctgatgggcctccaggagacccaggacagcctggaccgcctgga
gcaaaaggaatcccggggaggtgcacacaaggacccaagggtgtccaaggacttccgggc
ctaaatggattgaaagggcaaccaggtagaagaggcgatatggggccaaagggagaccct
ggcatcccaggcttggacaggtcaggaatgcctggagaacccggcccaccaggaatgcca
ggtcatcctggcgagataggaccacctggccggaaaggatatccaggggatgcaggatac
ccagggccaccaggcgagaaaggagaggttgggatgatgggttatcctggaaccactggt
cctccagggtctcctgggaaaccaggttcacaggggcagagaggtagccgtggaatcgca
ggaataaaaggggaaagaggacgcccaggatccaaaggtgaacgaggagagaagggaaat
cctgcaactctccaaattccacatttaaagggggacaaaggagaacccggattcaaagga
tttgtaggaaatccaggtgaaaaaggagacagaggcattccagggttatcaggtctgaaa
ggcttcgagggactgcctgggcccccaggccctccaggtaagggccctagaggcgacgtg
ggacacagtgggaatcctggagaagcagggccaggcggcatgccgggaagcatggggaac
atgggtgtgccaggccctaaagggagaaaaggaactttgggattaccgggtctagctgga
agaccaggccttccagggagtcgtggtcccnaaggagataagggggagcaaggtcattca
gaaggtgcaaggccaggaccacagggaccaaagggcattccaggtgatccaggattttcc
aggtatgacaaaggaaagaaaggagagagaggcccacctgggccacctggacaatcggga
cttgctggacctgacggtgcccctgggagtcctggaagtcgtggccacccagggaatccg
ggtcctggtggttgatttgggtccaaaggaaagaagggctgtccaggccttccaggaagc
actggccccccagcccctcaggattccccaggacctcctggacccaatgggtatgagagg
caacagggccatgatggaattcctggtccacccggagaaaaggagaagaccaggcttgcg
ggggcccatccaggcccaaaagggaaccctggtgttccaggtgtcaaaggagacaaggga
gccccaggcttgcctggcctccctggcaggaaggggaccatgggagatgttggacctcaa
ggacccccaggcatcagtggactcccaggaccaccaggtctacctggggcaattgtccct
ggcccaaaaggaaacaaaggtcttcctggcccaagaggaagtccaggtaagccaggtccc
cctgggnctccaggacttatcataaaaggcataaaaggtgacaaaggatttctgggccta
cctggccccaaaggtctacctgganatgtaggcgacatgggcccacaaggtcacccggga
gcaccaggtaccccaggtcttccaggtctcagaggtgatccaggattccctggatttcca
ggaataaaaggagagaagggtaatccaggatttcttggatcaattggacatccaggaccc
actgggccgaaaggaccacctggtgaacgtggaaaacctggtacacgtaagatcatctcc
cttccaggaagcccagggccacccggtccacctggacagccaggaatgaaaggagatcct
gggtcactgggaccacctggaatcccagggccctgtggaccaaaaggtaaaccaggcaag
gatggaaacccaggatctccaggagcagctggtggaaggggcaacaaaggctctaaaggc
cagcaagggccacctggattggacggattgccaggctttaagggaaaacctggagagagg
ggaacacctgcctctgggacaagaatgcaaggatttgtcttcacccgacacagtcaaacc
acagccattccttcgtgtcctgagggaacgcagccgctctacagtggcttttctcttctt
tttgtgcaaggaaatgaacgtgcgcaaggacaagaccttggcactctgggcagctgcctg
cagcgattcaccacaatgccattcttattctgtaacatcaacaatgtatgccattttgca
tcacggaatgactattcatactggctgtcgacaccagctctgatgccaatggacatggct
ccaattacgggcagagctctcgagccctatattagcaggtgtgtggtctgtgaaggtcct
gccatggccatagccgttcacagccaaacgacagctgtccctccatgtccccgtggctgg
gtttctctctggaaagggttttccttcgttatgttcacaagtgccggctccgagggagca
gggcaagcgctcgcatcacccggctcctgcctggaggagttccgagccagtccatttata
gaatgccatggacgaggaacatgtaactactactcaaactcctacagcttctggctggct
tcattaagccaagaaagaatgttcagaaagcctattccatcaactgtcaaagctggagat
ttagaaaaaatcataagccgctgtcaggtgtgcatgaagaaaagacactga
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