Arvicola amphibius (Eurasian water vole): 119820887
Help
Entry
119820887 CDS
T08327
Symbol
Trip12
Name
(RefSeq) E3 ubiquitin-protein ligase TRIP12 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
119820887 (Trip12)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
aamp04121
]
119820887 (Trip12)
Enzymes [BR:
aamp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
119820887 (Trip12)
Ubiquitin system [BR:
aamp04121
]
Ubiquitin ligases (E3)
HECT type E3
119820887 (Trip12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WWE
UNC45-central
HEAT_2
HEAT_Maestro
Motif
Other DBs
NCBI-GeneID:
119820887
NCBI-ProteinID:
XP_038195503
LinkDB
All DBs
Position
8:107126292..107243566
Genome browser
AA seq
2069 aa
AA seq
DB search
MSNRPNNNPGGSLRRSQRNTAGAQPQDDSIGGRSHLGQAKHKGYIPPESRKSNFKAPKVQ
SNTTSELSRGHLSKRSCSSSSTVIVPQPEDPDRANTSERQKTGQVPKKDNSRGVKRSASP
DYNRTNSPSSAKKPRAFQHIESLSETNKPHSKSKKRHLDQEQQVKSAQLPSTSKAHTRKS
VAAGSSRSQKRKRTESSCVKSGPESESTGAEERSAKPTKLASKSATSAKAGCSTITDSSS
AASTSSSSSSAVASASSTVPPGARVKQGKDQNKARRSRSASSPSPRRSSREKEQSKTGGS
SKFDWAARFSPKVSLPKTKLSLPGSSKSETSKPGPSGLQAKLASLRKSTKKRSESPPAEL
PSLRRSTRQKTTGSCASTSRRGSGLGKRGAAEARRQEKMADPESNQETVNSSAARTDEAP
QGAAASSSVAGAVGMTTSGESESDDSEMGRLQALLEARGLPPHLFGPLGPRMSQLFHRTI
GSGASSKAQQLLQGLQASDESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQM
EHNFDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSR
RHSKAILQAGGLADCLLYLEFFSINAQRNALAIAANCCQSITPDEFHFVADSLPLLTQRL
THQDKKSVESTCLCFARLVDNFQHEENLLQQVASKDLLTNVQQLLVVTPPILSSGMFIMV
VRMFSLMCSNCPTLAVQLMKQNIAETLHFLLCGASNGSCQEQIDLVPRSPQELYELTSLI
CELMPCLPKEGIFAVDTMLKKGNAQNTDGAIWQWRDDRGLWHPYNRIDSRIIEVAAHQVG
EDEISLSTLGRVYTIDFNSMQQINEDTGTARAIQRKPNPLANTNTSGYSELKKDDARAQL
MKEDPELAKSFIKTLFGVLYEVYSSSAGPAVRHKCLRAILRIIYFADAELLKDVLKNHAV
SSHIASMLSSQDLKIVVGALQMAEILMQKLPDIFSVYFRREGVMHQVKHLAESESLLTSP
PKACTNGSGSLGSTTPASSGTATAATNASADLGSPSLQHSRDDSLDLSPQGRLSDVLKRK
RLPKRGPRRPKYSPPRDDDKVDNQAKSPTTTQSPKSSFLASLNPKTWGRLSAQSNSNNIE
PARTAGVSGLARAASKDTISNNREKIKGWIKEQAHKFVERYFSSENMDGSNPALNVLQRL
CAATEQLNLQVDGGAECLVEIRSIVSESDVSSFEIQHSGFVKQLLLYLTSKSEKDAVSRE
IRLKRFLHVFFSSPLPGEEPIGRVEPVGHAPLLALVHKMNNCLSQMEQFPVKVHDFPSGN
GAGGSFSLNRGSQALKFFNTHQLKCQLQRHPDCANVKQWKGGPVKIDPLALVQAIERYLV
VRGYGRVREDDEDSDDDGSDEEIDESLAAQFLNSGNVRHRLQFYIGEHLLPYNMTVYQAV
RQFSVQAEDERESTDDESNPLGRAGIWTKTHTIWYKPVREDEENSKDCVGGKRGRAQTAP
TKTSPRNAKKHDELWHDGVCPSVANPLEVYLIPTPPENITFEDPSLDVILLLRVLHAISR
YWYYLYDNAMCKEIIPTSEFINSKLTAKANRQLQDPLVIMTGNIPTWLTELGKTCPFFFP
FDTRQMLFYVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRTVNREELLKQAE
SVMQDLGSSRAMLEIQYENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVTLSNPKGS
QEGTKYIQNLQGLFALPFGRTAKPAHIAKVKMKFRFLGKLMAKAIMDFRLVDLPLGLPFY
KWMLRQETSLTSHDLFDIDPVVARSVYHLEDIVRQKKRLEQDKSQTKESLQYALETLTMN
GCSVEDLGLDFTLPGFPNIELKKGGKDIPVTIHNLEDYLRLVIFWALNEGVSRQFDSFRD
GFESVFPLSHLQYFYPEELDQLLCGSKADTWDAKTLMECCRPDHGYTHDSRAVKFLFEIL
SSFDNEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYL
KLPDYSSIEIMRDKLLIAAREGQQSFHLS
NT seq
6210 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccggcctaataacaatccaggggggtcactgcgacgttcacagaggaacact
gccggggcccaaccacaagacgactcaataggaggaaggtcacatttagggcaggcaaaa
cataagggatatatccctcctgagagtagaaaatctaattttaaggcacccaaagtgcaa
tctaataccacttctgaactgtcaaggggacacctttctaaaagaagctgcagttcatca
tctactgtcatagttccacaaccagaggatccagacagagccaatacttctgaaaggcag
aaaacggggcaggtgcctaagaaagacaattctcgaggagtgaaacgcagtgctagtcca
gactacaacaggaccaattctcctagctctgcgaaaaagcccagagcatttcagcacatt
gagtctctctcagaaaccaataagccacatagtaagtcgaagaagagacatttagaccag
gagcaacaagtgaaatctgcacaattgccatcaacaagcaaggctcacaccagaaagagt
gtggctgctggtagttcacggagtcaaaaaagaaagaggacagagagttcttgtgttaag
agtggtcctgagtctgaatcaactggtgccgaagagagatctgcaaaacccaccaagctg
gcttcaaaatcagccacctcagccaaagctgggtgtagcaccatcaccgattcttcttct
gctgcctctacttcctcctcctcctcttcggctgtagcttcagcctcttcgactgtacca
ccaggtgccagggtgaaacaaggaaaagaccagaacaaggccaggcgttcccgttcagcg
tccagtcctagtcccagaagaagtagcagggagaaggagcagagtaaaactggtggctct
tcaaaatttgattgggctgctcgtttcagccctaaagttagcctacctaaaacaaaactg
tctcttccagggtcttctaagtcagagacatcaaaacctggaccttctggattacaggcc
aaattagcaagtttaagaaagtctaccaagaagcgcagtgagtccccacctgctgagctc
cccagtttgaggaggagcacacgtcaaaagaccacgggctcctgtgctagtaccagtcgg
cgaggctctggcctgggcaagagaggagcagctgaggcccggcggcaagagaaaatggca
gacccagaaagcaaccaggagacagtaaattcctcagctgcccggacagatgaagctccg
caaggagcagcagcctctagttctgttgcaggggctgttggcatgaccacctctggggag
agtgaatcggatgattctgagatgggacgattacaagccctgttagaggccaggggtctt
cctcctcacctgtttggtcctcttggtcctcggatgtcacagcttttccatagaacgatt
ggaagcggagctagttctaaggcccaacagcttcttcaaggactgcaagcgagtgatgag
agtcaacagcttcaggcagtcattgaaatgtgtcagctactggtcatgggaaatgaggag
acattaggagggtttcctgtgaagagtgttgttccagctttgataacattactacagatg
gaacataattttgacattatgaatcacgcttgccgagccttaacgtacatgatggaagca
ctccctcgatcatctgctgttgtcgtagatgctattcctgtcttcttagaaaagctgcaa
gttattcagtgtatcgatgtggcagagcaggccttaactgccttggagatgctgtcacgg
cgacatagtaaagccattttacaggcgggtggcttggcagactgcttgctgtatctagaa
ttcttcagcataaatgcccaaagaaatgcactagcaattgcagccaattgctgccagagt
atcacacctgatgaatttcattttgtggcagattccctaccattacttacccagaggcta
actcatcaggacaaaaagtcagtagaaagcacttgcctttgttttgcacgcctagtggac
aactttcaacacgaggagaatttactgcagcaggttgcttccaaagatctgctaacaaat
gttcaacaactattggtagtgactccaccgattttaagttctgggatgtttataatggtg
gttcgcatgttttctctgatgtgttccaactgtccaacactagctgttcagcttatgaaa
caaaacattgcagaaacacttcactttcttctgtgtggtgcctccaatggaagttgtcaa
gagcagattgatcttgttccacgaagtcctcaagaactgtatgaactgacctctctgatt
tgtgaacttatgccatgtttaccaaaagaaggcatttttgcagttgatacaatgctaaag
aagggaaatgcgcagaatacagatggtgcaatttggcagtggcgggatgaccgaggcctc
tggcatccctacaacaggattgacagccggatcattgaggtagcagcccatcaggtcggt
gaggatgagataagcttgtccactctgggacgagtttatactattgattttaattctatg
cagcaaatcaatgaggacacgggaacagcacgtgccattcagagaaaacctaacccctta
gccaatactaacactagtggatattcagagttaaagaaggatgatgctcgagcacagcta
atgaaagaagatccggaactggctaagtctttcattaagaccttatttggtgttctctat
gaagtgtatagctcctcagcaggacctgcagtcagacataagtgccttagagcaattctt
aggataatttattttgctgatgctgaacttctgaaggatgttctgaaaaatcatgctgtt
tcaagtcacattgcttccatgctatcaagtcaagatctgaagatagtagttggagcactt
cagatggcagaaatcttaatgcaaaagttacctgatattttcagtgtttacttccgaaga
gaaggtgtcatgcatcaagtaaagcatttagcagaatctgagtctttgttgacaagtcca
ccaaaggcatgtacaaatggttcaggatccctggggtccacaacaccagccagcagtggg
acagccacggctgcaaccaatgcttctgctgatcttgggtcacccagcttgcagcatagc
agagatgattcactggacctgagccctcaaggtcgattaagtgatgttctcaagagaaaa
cgactgccaaaacgagggccaagaaggccaaagtattcacctccaagagatgatgacaaa
gtggacaatcaagctaaaagccctaccactactcagtcacctaaatcttccttcctggca
agcttgaatccaaaaacatgggggagattaagtgcacagtccaacagcaacaacattgag
ccagcacgaactgcaggagttagtggtcttgccagggcagcctcaaaagacaccatatcc
aataatagagaaaaaattaaaggttggattaaggagcaggcgcataaatttgttgagcgt
tactttagttcagagaatatggatggaagcaaccctgccttgaatgtacttcagagactt
tgtgctgcaactgaacaactcaacctccaggtggatggtggagctgagtgccttgtagaa
atccgtagcatagtctccgaatcagatgtttcatcatttgaaatccaacatagtggattt
gtgaaacaactgttgctctacttgacatctaaaagtgaaaaggatgctgtcagcagagag
atccgattaaagcgattcctacatgtatttttttcttctccacttcctggagaagagccc
attggaagagtagaaccagtgggccatgcacctttgttggcactagttcataagatgaac
aactgcctcagccaaatggagcaatttccagtcaaagtgcacgatttccctagtggaaat
ggggctggaggcagcttttctctcaacagaggatcacaagctttaaaatttttcaacaca
catcagttaaaatgtcaattacaaagacacccagactgtgcaaatgtgaagcagtggaaa
ggcggacctgtcaagatcgatcctctggctctggtgcaagctattgaaagataccttgtg
gttagagggtatggaagagtaagagaagatgatgaagacagtgatgatgatggatcagat
gaggaaatagatgagtccctggctgctcagtttttaaattcaggaaatgtaaggcacagg
ctacagttttatattggagaacatttactaccttataacatgacggtgtatcaggcagtg
cggcagttcagtgtacaggctgaagatgaaagggaatctactgatgatgagagcaatcct
ttgggaagagctggtatttggacaaagactcatacaatatggtacaaacccgtgagagag
gatgaagaaaatagtaaagattgtgttggtggcaaaaggggaagagcccaaacagctcca
acaaaaacttcccccagaaatgcaaagaagcatgatgagttatggcatgatggagtgtgc
ccatcagtagcaaatcctttagaagtttacctcattcccacaccacctgaaaatattacc
tttgaagacccatccttagatgtgatccttcttttaagagttttacacgccatcagtcga
tactggtattacttgtatgataatgcgatgtgcaaggagattattccaactagtgaattt
attaacagtaagttaacagcaaaagcgaataggcagcttcaagatcctctagtaatcatg
acaggaaacatcccaacatggctcactgaactaggaaaaacctgcccatttttctttcct
tttgatacccgacaaatgcttttttatgtaactgcatttgatcgagaccgggcaatgcaa
agattgcttgataccaacccagaaatcaaccagtctgattcacaagacagcagagttgca
cctagattggatagaaaaaagcgcactgtgaacagagaggagctgctaaaacaagctgag
tctgtgatgcaggaccttggtagttcacgggccatgttagaaatccagtatgaaaatgag
gttggtacaggtcttgggccaacactggagttttatgcacttgtttctcaggaactacag
agggctgatttaggtctctggagaggtgaagaagtaactcttagcaatccaaaaggaagc
caagaagggaccaagtatattcaaaacctccagggcctgtttgcgcttccctttggtagg
acagctaagccagctcatatcgcaaaggttaagatgaaatttcgcttcttaggaaaatta
atggctaaggctatcatggatttcagattggtggaccttccgcttggcctacccttttat
aaatggatgctgcggcaggaaacttcactgacatctcatgatttatttgacattgatcct
gttgttgccagatcagtatatcacctagaagacattgtcagacagaagaaaagactggag
caggataaatctcagactaaagagagtctacagtatgcattggaaactctcacaatgaat
ggctgctcagtggaagatctgggactggactttacactgccggggtttcccaacattgaa
ctgaagaaaggagggaaggatataccagtcactatccacaatttagaggactacctaaga
ttggtgatattctgggcattaaatgaaggtgtttctaggcagtttgactcgttcagagat
ggatttgagtcagttttcccactcagtcatcttcagtacttctacccagaagaactggat
cagctcctgtgcggcagtaaagcagacacttgggatgcaaagacattgatggaatgctgt
aggcctgatcatggctatactcatgacagtcgagctgtgaagttcttgtttgagattctc
agtagttttgataatgagcagcagagattgtttctccagtttgtgactggtagcccacga
ttgccagttggagggttccggagtttaaatccacctctgacaattgtgcggaagacattt
gaatcaacagaaaacccagatgacttcttaccctctgtaatgacttgtgtgaactatctt
aaattgccggactactcaagcattgagataatgcgtgacaaactgttgatagcagcaaga
gaaggccaacagtcgttccatctttcctga
DBGET
integrated database retrieval system
