Arvicola amphibius (Eurasian water vole): 119820940
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Entry
119820940 CDS
T08327
Symbol
Prdm1
Name
(RefSeq) PR domain zinc finger protein 1 isoform X1
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
aamp03000
]
119820940 (Prdm1)
Transcription factors [BR:
aamp03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
119820940 (Prdm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
zf-C2H2_4
zf-C2H2_6
C2CH-3rd_BIRD-IDD
Zf-C2H2_ZNF451_C
zf-C2H2_jaz
zf-C2HE
zf-met
STL11_N
Motif
Other DBs
NCBI-GeneID:
119820940
NCBI-ProteinID:
XP_038195604
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Position
8:complement(55880793..55901904)
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AA seq
830 aa
AA seq
DB search
MTPGVQGHRTQQRPQHILPLEAASKYSSSSVKFQALAERTGIMKMDMEEADMTLWTEAEF
EEKCTYIVNDHPWDSGADGGTSVQAEASLPRNLLFKYATSNSKEVAGVVSKEYIPKGTRF
GPLIGEIYTNDTVPKNANRKYFWRIYSREEFHHFIDGFNEEKSNWMRYVNPAHSAREQNL
AACQNGMNIYFYTIKPIPANQELLVWYCRDFAERLHYPYPGELTVMNLTQMESNPKQYSS
EKNELYPKNVPKREYSVKEILKLDSNSSKRKDFYRSDISPLTLEKDMDGFRKDGSPDMPF
YPRVVYPIRAPLPEDFLKASLAYGIERPTYITHSPLPSSTTPSPPASSPEQSLKSSSPHG
SPGNTVSPLVPGPPEPRDSYSYLNASYGSEGLGSYPGYAPAPHLSPAFIPSYNPHYPKFL
LPPYGISSSGLSTMNNINGINNFSLFPRLYPVYSNLLGGGNLPHPMLTPASLPSSLPTDG
ARRLLPPEHPREMLVPAPHSAFSLTGAAASMKDESSPPSGSPTAGTAATSEHVVQPKATS
AVMAAPSTDGAMNLIKNKRNMTGYKTLPYPLKKQNGKIKYECNVCAKTFGQLSNLKVHLR
VHSGERPFKCQTCNKGFTQLAHLQKHYLVHTGEKPHECQVCHKRFSSTSNLKTHLRLHSG
EKPYQCKVCPAKFTQFVHLKLHKRLHTRERPHKCTQCHKSYIHLCSLKVHLKGNCPVAPA
PGLPLEDLTRINEEIEKFDISDNADRLEDMEDNIDVTSMVENEILSVVRKEKEETGLKVS
LQRNMGNGLLSSGCNLYESSDLSLMKLPHSNPLPLVPVKVKQETVEPMDP
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgaccccaggcgtccagggacacaggacacagcagcgcccacaacatattctgccttta
gaggctgcctctaagtatagctccagctccgtgaagtttcaagcgttagcagagaggact
gggatcatgaaaatggacatggaggaagctgatatgactctatggacagaggctgagttt
gaagagaagtgtacctacatagtgaatgaccacccctgggattccggcgccgacgggggg
acttctgttcaagcagaggcatccttaccaaggaacctgcttttcaagtatgccaccagc
aacagcaaagaggtcgctggagtggtgagtaaggagtacataccaaagggaacgaggttt
ggacccctgataggtgaaatctacaccaatgacacagttcccaagaacgccaacaggaaa
tatttttggcggatctactccagagaggagttccaccacttcattgatggctttaatgag
gagaaaagcaactggatgcgctacgtgaatccagctcactctgcccgcgagcaaaacctg
gctgcctgtcagaacgggatgaacatctacttctacaccattaagcccatccctgccaac
caggaacttcttgtgtggtattgtcgggactttgcagagaggcttcactatccttatcct
ggagagctcacagtgatgaatctcacacaaatggaaagcaacccaaagcaatacagtagt
gagaaaaatgaactttacccaaagaatgtccccaagagagagtacagcgtgaaagaaatc
ctaaaactggactccaattcctctaaaaggaaggacttctaccgttccgacatttcaccc
ctcactttagaaaaggacatggatggctttaggaaagatgggagccctgacatgcccttc
tatcctcgggttgtttaccccatccgggcacctctgccggaagactttttgaaagcgtcc
ctggcctacgggatagaaagacccacttacattacccacagcccgcttccatcttccaca
actccaagccccccggcaagcagcccggaacagagcctcaagagctccagcccccacggc
agcccggggaacaccgtgtcgcccctggtgccaggtcccccggaaccccgggactcctac
tcctacttgaatgcttcctatggctccgagggcctgggctcctaccctggctacgcacct
gccccccacctctcaccagctttcatcccctcttacaatcctcactaccccaagttccta
ttgccaccctatggcataagttccagtggcttgagcaccatgaacaacatcaatggcatc
aacaacttcagcctcttccccaggttgtatcctgtctacagcaacctccttggtggaggc
aacttgcctcatccaatgctcaccccagcttccctaccaagttccctgcccacagatgga
gcccggaggctgcttccaccggagcaccccagagagatgcttgttccagcaccccacagt
gccttttcccttaccggggctgccgccagcatgaaggacgagagtagtccccccagtggt
tctccaacagcgggaaccgcagccacgtccgaacacgtggtacaacccaaagctacctca
gcagtgatggcagcccccagcactgacggagccatgaatctcatcaaaaacaaaagaaac
atgactggttacaagactcttccctacccgctgaagaagcagaacgggaagatcaagtat
gagtgtaatgtttgtgccaagacgttcggtcagctctccaacctgaaggtccacttgaga
gtgcacagtggagaacggcctttcaaatgccagacctgcaacaagggtttcactcagctc
gcccacctgcagaaacactacctggtgcacacgggagaaaagccacatgaatgtcaggtc
tgtcacaagcgattcagcagcacaagcaatctcaagacccaccttcgactgcattctgga
gaaaaaccttaccaatgtaaggtgtgccctgccaagtttacccagtttgtgcacctgaag
ctgcataaacgactgcatacccgggagcggccccacaagtgcacccaatgccataagagc
tacatccatctctgcagcctcaaggtccacctgaaaggcaactgtcccgtggccccggcc
cctgggctgcctttggaggatctgacccgaatcaatgaagaaattgaaaagtttgacatt
agtgacaatgctgaccgtcttgaggacatggaggacaacatagatgtgacctctatggtg
gagaatgagattctatctgtggtcagaaaagagaaagaggaaactggtctgaaagtgtct
ttacaaagaaacatggggaatggactcctctcctcagggtgcaacctctatgagtcatca
gacctgtccctcatgaagttgcctcacagcaacccactacctctggtgcctgtaaaggtc
aaacaagaaacagttgaaccgatggatccttaa
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