Arvicola amphibius (Eurasian water vole): 119821026
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Entry
119821026 CDS
T08327
Symbol
Hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03015
mRNA surveillance pathway
aamp05134
Legionellosis
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119821026 (Hbs1l)
09160 Human Diseases
09171 Infectious disease: bacterial
05134 Legionellosis
119821026 (Hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamp03019
]
119821026 (Hbs1l)
Messenger RNA biogenesis [BR:
aamp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
119821026 (Hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
GIP1_N
Motif
Other DBs
NCBI-GeneID:
119821026
NCBI-ProteinID:
XP_038195752
LinkDB
All DBs
Position
8:29752903..29826057
Genome browser
AA seq
682 aa
AA seq
DB search
MARHRNVRGYNYDEDFEEDDLYGQSVEDDYCISPSTAAQFIYSRRDNPVEEYGYEDLKES
SNSLLNHQLSELDQARLYSCLDHMREVLGDAAPDDVLIEAILKNKFDVQKALSVVLEQDN
VQNTKEKSERAVSAGKASKGKSVGSRSSQSESEIVPKVAKMTVSGKKQTMGFEVPGLTSE
ENGDSLHTPHKGPPGDDGSGASPNVLETSAHKSALLPPSVQASEELSSTPTPVKKSGKLR
QQIDVKAELEKRQGGKQLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQESKKA
GKASFAYAWVLDETGEERERGVTMDVGMTKFETTTKVITLMDAPGHRDFIPNMITGAAQA
DVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQERFQEIT
GKLGHFLKQAGFKESDVAFIPTSGLSGENLITRSQSRELTTWYKGSCLLEQIDSFKPPQR
SIDKPFRLCVSDVFKDQGSGFCVTGKIEAGYVQTGDRLLAMPPNETCTAKGITLHDEPVD
WAAAGDHVSLTVVGMDIIKINVGCIFCGPKEPIKACTRFRARILIFNIEVPITKGFPVLL
HYQTVSEPAVIKRLISVLNKSTGEVTKKKPKLLTKGQNALVELQTQRPVALELYKDFKEL
GRFMLRYSGSTIAAGVVTEIKE
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggcccggcatcggaacgtccgaggatataactacgatgaagatttcgaagaagatgat
ttgtatggccagtctgtggaggatgattattgtatttcaccatcaacagctgctcagttt
atttactcacgacgtgacaatcctgtagaagaatatggttatgaagatctgaaagagtct
tctaattctcttttgaatcaccaattaagtgaacttgaccaagctcgtctgtactcatgc
cttgatcacatgcgagaggtgctgggagatgctgcgcctgatgacgtactgattgaagca
attctgaaaaacaagtttgatgtccagaaggctttgtcagtggttctggaacaagacaat
gtgcagaacacgaaggagaagagtgaaagagcagtgtctgcaggaaaggcgtcgaaagga
aaatcagttggatctcggtcatctcagagtgagtctgaaattgtgccaaaagttgctaaa
atgactgtatctgggaagaagcaaactatgggatttgaagtgcctggtttaacctctgag
gagaacggagatagtttgcatactcctcacaaaggccctcctggtgacgatggcagcggt
gcttctcctaacgttcttgagaccagcgctcataaatctgcgctcctacctccctccgtt
caagcgtcagaagagctgagctcaactcccacaccagtcaaaaagtctggcaagctaagg
cagcagatagacgtgaaggcagagctggagaagcggcagggcgggaagcagctcctcaac
ttagtggtcattggtcatgttgatgctgggaaaagtactctgatgggccatttgctttat
ctgctgggtaatgtaaacaaaagaactatgcataaatatgagcaagaatctaaaaaggct
ggcaaggcttcctttgcatatgcatgggtcttggatgagactggagaagaaagggaaagg
ggagtaacaatggatgttggcatgacgaagtttgaaaccacaaccaaagttattacatta
atggatgctccaggccatagagacttcattcctaacatgatcacaggagcagcccaggct
gatgtagctgttttagttgttgatgccagcaggggagagtttgaagctggatttgagact
ggaggacagacgcgggagcatggccttttggtccgttctcttggagtgacacagcttgct
gtggccgtcaataaaatggatcaggtaaattggcaacaagaaagatttcaagagattact
ggaaaacttgggcattttcttaagcaagcaggctttaaggagagtgatgtagctttcatc
cccacgagtggtctcagtggtgaaaatttaatcacaagatcacagtcgcgtgagctcacg
acgtggtataaagggtcctgtttactagaacagatagattccttcaagccccctcagcgc
tccattgacaagccttttagattgtgtgtgtcggacgtcttcaaagatcaaggatctggc
ttttgtgtgactggtaaaattgaagctggttatgtccaaactggtgaccgactgttagca
atgccacccaatgaaacttgtactgcaaaaggaatcactctgcatgatgaacctgttgac
tgggcagcagcgggcgatcacgttagtcttactgtggttgggatggatatcatcaaaatc
aatgttggctgcatattttgtggccccaaagaacctatcaaagcttgcactcgcttcaga
gcccggatcctcatcttcaatattgaagttcctataactaaaggatttcctgtgctgtta
cactaccaaaccgtcagcgagcctgctgtgattaagcgattgatcagtgtcctaaacaaa
agtactggagaagtcacaaagaaaaagcctaagctgctcaccaagggccagaatgcactg
gtagagctgcagacgcagagaccggtggctctggagctctacaaagacttcaaggagctg
gggaggtttatgctgcggtacagcggctccaccatagctgctggtgttgtcactgagata
aaagagtga
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