Arvicola amphibius (Eurasian water vole): 119821250
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Entry
119821250 CDS
T08327
Symbol
Bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
119821250 (Bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamp03019
]
119821250 (Bard1)
04121 Ubiquitin system [BR:
aamp04121
]
119821250 (Bard1)
03036 Chromosome and associated proteins [BR:
aamp03036
]
119821250 (Bard1)
03400 DNA repair and recombination proteins [BR:
aamp03400
]
119821250 (Bard1)
Messenger RNA biogenesis [BR:
aamp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
119821250 (Bard1)
Ubiquitin system [BR:
aamp04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
119821250 (Bard1)
Chromosome and associated proteins [BR:
aamp03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
119821250 (Bard1)
DNA repair and recombination proteins [BR:
aamp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
119821250 (Bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_6
Ank_4
Ank
Ank_2
Ank_3
Ank_5
BRCT_2
BRCT
zf-RING_5
zf-C3HC4
ANK_LRRK2
zf-C3HC4_2
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
119821250
NCBI-ProteinID:
XP_038196106
LinkDB
All DBs
Position
8:120344690..120418343
Genome browser
AA seq
765 aa
AA seq
DB search
MPRRPPTVRSGNKPASAPAMEPADDGPWAYSRAALARLERLLRCSRCANILKEPVCLGGC
EHIFCSVCISDCVGSGCPVCYTPAWILDLRINRQLDSMIQLYSKLRNLLHDDKLSDPKDN
TSRADLFGNTERKRNSVKMWFSPRRKKVRYVLSKESMLTQPGKEEGGRTQGASIYDFVST
TPPEVVPKRAKAASRTSAKKQQKKSSAEINQEGNLRPETDDSRFDSKEELKEKVVSCSRT
PVVESPQVNGEIDLLASGSAAESECSGGLTEVSLPLAEHIVSPDTVSKEETPEKKVCVKD
LRSRERYENHKGCSRPSSPVSKNCGSNVLSPSRDVIKPAVLTENMLLVDCSSASSDQFQV
DVTLKRNSNISDDFLSLSPGVPPPLLNNSTHGQMMPSPSTVKLSPSIMAGKRNHRGETLL
HIASIKGDIPSVEYLLQNGNDPNVKDHAGWTPLHEACSHGHLKIVELLLQHNALVNTTGY
QNDTPLHDAAKNGHIDIVKVLLSYGASRNAVNIFGVRPVDYTDNENIKSLLLPPEKNESF
STSQCSVVTAGQRRNGPLVLIGSGLSSQQQKMLSKLETVLKAKKCAEFDSTVTHVIVPDD
EAQSTLKCMLGILNGCWILTFEWVKACLHSKVREQEEKYEVPGGPQRSRLNREQLLPKLF
DGCYFFLGGNFKHHPKGDLLKLIAAAGGKVLSRKPKPDSDVTQTINTVAYHANPDSDQRF
CTQYIVYEDLFNCRPERVRQGKVWMAPSTWLISCVMAFELLPLDS
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgtaggccgccgaccgtccgctctgggaacaagcctgcttccgcgcccgccatg
gagccggctgacgacgggccctgggcctacagccgcgcggcgctcgcccgcctggagagg
cttctgcgctgctcccgctgcgctaatattctgaaggaacccgtgtgcttaggaggatgt
gagcacattttctgtagtgtttgtataagtgactgtgttggatcaggatgtccagtatgt
tacaccccagcctggatcctagacctcaggataaacagacagttggacagcatgatccag
ctttatagtaagcttcgaaatttgctacatgacgataaactttcagatcccaaagacaac
acatctagggcagatttatttggtaatacagaaaggaagaggaattcagttaaaatgtgg
ttcagccctcgaaggaagaaggttaggtacgtattgagtaaagagtccatgctaacccag
cctggaaaggaagagggtggcagaacccaaggagcctccatatatgattttgtctctaca
actccccctgaagttgttcctaagagggccaaagcagcttctagaacatctgcaaaaaag
cagcagaagaaatcttcagctgagattaaccaggaggggaatttaaggccagaaacagat
gatagtaggtttgattccaaagaggaactgaaggagaaggttgtctcctgtagccgaaca
ccagttgtggaaagtccacaggtaaatggtgaaatagacttattagccagtggttctgct
gcagaatctgaatgttctggaggattgacagaagtctccttaccattggctgagcatatc
gtgtctccagacactgtgagcaaggaagagacgcctgagaagaaggtctgtgtaaaagat
cttcgttcaagagagcgttatgaaaatcacaaaggctgcagcaggccttctagtcctgtt
tctaagaattgtgggagcaatgttctgagccccagcagagatgtcattaaaccagcagtg
cttacagaaaatatgctgttggttgactgttcttcggcgtcttcagaccaatttcaagtt
gatgtcacactcaagagaaacagtaacatatcagatgacttcctcagcctttcaccgggt
gtacccccacctctgctgaataattcaactcatggacaaatgatgccaagcccctccaca
gtgaagctgtcacccagtattatggccgggaagagaaatcacagaggagagactttgctt
catattgcttctattaagggtgatataccttctgttgaatacctcttacaaaatggaaac
gacccaaatgttaaagaccatgctggatggacaccattgcatgaagcctgcagtcatggg
cacctgaagatagtggaattgctgctccagcataatgctttggtgaacaccacaggctat
cagaatgacacaccactccacgatgcggccaagaatgggcacatagatatagtcaaggtg
ttactgtcctatggtgcctccaggaatgctgttaacatatttggtgtacggcctgtggat
tatacagacaatgaaaatataaaatcattattgctgccaccagagaagaatgaatcattc
tctactagccagtgctcagtcgtgactgctggacagcgaaggaatgggccattggtgctg
ataggcagtggactttcttcacagcagcagaaaatgctcagcaaactcgagacagttctt
aaggctaaaaaatgtgctgagtttgacagtacagtaactcatgtcattgttcctgatgat
gaagctcaaagtactttgaagtgtatgcttgggattctcaatggatgctggattctgacg
tttgaatgggtgaaggcctgtctgcacagtaaagtacgtgaacaggaggaaaagtacgaa
gttcctggaggtccacagaggagcaggctcaacagagagcagctgttgccaaagctgttt
gatggatgctacttctttttggggggaaacttcaagcatcatccaaagggtgaccttctt
aagctcattgctgcagcaggaggcaaggtgctcagtagaaagcccaagccagacagtgat
gtgactcagaccatcaacacagtggcataccatgccaaccctgattctgaccagcgtttc
tgcacacaatacatcgtctatgaagatctctttaattgtcgcccagaaagggttcggcag
ggcaaagtctggatggctccttccacctggcttatcagctgtgtaatggcctttgaattg
cttcctcttgacagctga
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