Arvicola amphibius (Eurasian water vole): 119821536
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Entry
119821536 CDS
T08327
Symbol
Cnot3
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119821536 (Cnot3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamp03019
]
119821536 (Cnot3)
Messenger RNA biogenesis [BR:
aamp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119821536 (Cnot3)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
119821536 (Cnot3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Cluap1
DUF4407
Motif
Other DBs
NCBI-GeneID:
119821536
NCBI-ProteinID:
XP_038196545
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Position
8:65187085..65202938
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AA seq
752 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLIENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDQKQDRIEGLKRHIEKHRYH
VRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLEDIPQALV
ATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQS
PAKNGSKPVHSNQHPQSPAVPPTYPSGPPPATSALSSTPGNNGASTPAAPPSALGPKASP
APSHNSGTPAPYAQAVAPPNASGPSTAQPRPPSAQPSGGSGGGSGGSSSNSNSGTGGGAG
KQNGATSYSSVVADSPAEVALSSSGGSSASSQALGPTSGPHNPAPSTSKESSTAAPIGAG
NVASGSGNNSGGPSLLVPLPVNPPSSPTPSFSEAKAAGTLLNGPPQFSSTPEIKAPEPLS
SLKSMAERAAISSGIEDPVPTLHLTERDIILSSTSAPPTSAQPPLQLSEVNIPLSLGVCP
LGPVSLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVE
FYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQ
GTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaagcgcaaactccaaggtgagattgatcgctgcctcaagaaggtgtccgaa
ggcgtggagcagtttgaagatatttggcaaaagctccacaatgcagccaacgcgaaccag
aaagaaaagtatgaggctgacctaaagaaggagattaagaagctacaacggctgagggac
cagatcaagacatgggtagcatccaacgagatcaaggacaaaaggcagcttatcgaaaac
cgcaagctcattgaaacgcaaatggaacggttcaaagttgtggaacgagagaccaaaacc
aaagcttatagcaaggagggcctaggtctggctcagaaggtggaccctgctcagaaggag
aaggaagaggttggccagtggctcacgaacaccattgacaccctaaatatgcaggtggac
cagtttgagagtgaggtggagtcactgtcggtacagacacgcaagaagaagggcgacaag
gatcagaagcaggaccggattgagggcttgaagcggcacatcgaaaagcaccgctaccat
gtacgcatgctggagaccattctgcgcatgctggacaatgactccatcctggttgacgcc
atccgaaagatcaaggatgatgtggagtactacgtcgactcatcccaggaccctgacttt
gaagagaatgaattcctctatgacgacctggacctcgaggacattccacaggcgctggtc
gccacctccccacccagccacagccacatggaggatgagatcttcaaccagtccagcagc
acgcccacctcaacaacttccagctctcccatcccacccagcccagctaactgcactacg
gaaaactctgaagatgataagaagagaggccgctcaacagatagtgaagtcagtcagtct
ccagccaaaaacggctccaagcctgtccacagcaaccagcacccccagtccccagctgtg
ccgcccacctatccctctggccccccacctgccacttctgccttgagctccacccctggc
aacaatggggcctctaccccagcagcacctccaagtgccctgggccccaaggccagtcca
gctcccagccacaactcgggtactcctgccccctatgcccaggctgtggccccacccaat
gccagcgggcccagcactgcccagccccggccccccagtgcccagccgagcgggggaagt
ggtggtggcagcggagggagcagcagcaatagtaacagtggcacaggcggaggggctggc
aagcagaacggtgccaccagctacagttcagttgttgcagacagtcctgcagaggtggcc
ctgagcagcagtgggggcagcagtgccagcagccaagccctggggcctacttcaggccct
cacaacccagctccaagcacctcaaaggaatccagtacggcagccccaataggggctggg
aatgtggcttcaggctcagggaacaactcagggggacccagcctcttggtgccactgcct
gtgaatccccccagttctccaacgcccagctttagtgaggccaaggcagctggcaccctg
ctcaatggtcctccacagttcagcagtaccccggaaatcaaggcccctgaacctctgagc
tctctgaaatccatggcagaacgggcagctatcagctctggtattgaggaccctgtgcca
accttacacctaacagagcgagacatcatcctgagcagcacatcagcaccccccacctca
gcccagccacccctgcagctgtcagaggtgaacataccattgtcactgggtgtgtgtcca
ctggggccagtgtccctcaccaaggagcagctctatcagcaggccatggaagaggccgcc
tggcaccatatgccccacccctctgactccgagcgcattcggcaatacctccctcggaac
ccttgcccgacgcccccctaccaccaccagatgccacccccacactcggacaccgtggag
ttctaccagcgcctgtcaactgagacactcttcttcatcttctactatctggagggaacc
aaggcacagtacttggcagccaaggccctaaagaagcagtcctggcgattccacaccaag
tacatgatgtggttccagaggcatgaggagcccaagaccatcacagatgagtttgagcag
ggcacctacatctactttgactacgagaagtggggccagcggaagaaggaaggcttcacc
tttgagtaccgctacctggaggaccgggacctccagtga
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