Arvicola amphibius (Eurasian water vole): 119822194
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Entry
119822194 CDS
T08327
Symbol
Col18a1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
119822194 (Col18a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aamp04147
]
119822194 (Col18a1)
00535 Proteoglycans [BR:
aamp00535
]
119822194 (Col18a1)
00536 Glycosaminoglycan binding proteins [BR:
aamp00536
]
119822194 (Col18a1)
Exosome [BR:
aamp04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
119822194 (Col18a1)
Proteoglycans [BR:
aamp00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
119822194 (Col18a1)
Glycosaminoglycan binding proteins [BR:
aamp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119822194 (Col18a1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Fz
Laminin_G_3
Laminin_G_2
DUF7693
Motif
Other DBs
NCBI-GeneID:
119822194
NCBI-ProteinID:
XP_038197097
LinkDB
All DBs
Position
9
Genome browser
AA seq
1766 aa
AA seq
DB search
MAPDPSRRLWLLLLLLSCCLEPARPNKNPLNPLNSLRPLVWLWPTKTEDPVSKPQISSPV
QSTGSPTTHVVHQDGLTDQQTTPANPRLPLEDQEAGQSGTPTAPALPIPPTASAASPDMK
EENVAGVGAKILNVAQGIRSFVQLWDEDTATENSAGTETPASSIPTVLLTPTEFSSAPQE
DETTLWQSGGVSSSPDVQTTEAGTLAVPTQPPPSLNSLQAPLRRPPGSPAPPGRAFLSPT
RIRAPPWGSQKPPRQPRHLEGNRLLPMASRPSQQHQRSDVHSDIHGHIPLLLPLVTGPLV
TASLSVHGLLSVPSSDPSAQLSPVAALPGLPGAWVSHMATSSGSELSNDSAVLGTGSLTS
TSRCLPLPPTLTICSHLGIGHFWLPNHLDHKSSEEVEATAQAWGHLLQTNCHPFLAWFFC
LLLAPSCGPGPPPALPPCRQFCEVLEDGCWNHLDGGRLPVNCASFPSQEDGYCVFIGPAA
ENIAEEVGLPQLLGDPLPPQIQQIEDPDVGPAYVFGPDSSGGQVAQYHFPRLFFRDFSLL
FHIQPATKAAGVLFAITDAAQTVVSLGVKLSGVQDGYQNISLLYTEHGASQTHTGASFHL
PAFVGQWTHFALSVDGGSVALYIDCEEFQKVPFVRSPQGLELEHDSGLFVGQAGAADPDK
FQGKISELKIRQNPRVSPVHCLDEDDDDEDRASGDFGSGFEESSKPHREEDINLAPRLPQ
PPPVTSPPLAGGSTTEDSRTEGTEEETTVESIGAETLPGTSGTWEESVQNHGGGLIKGGL
KGQKGEPGAPGLPGPAGPQGPAGPVVQNPSVQPVPGAQGPPGPQGPPGKDGAPGRDGEPG
DPGEDGRPGDTGPQGFPGTPGEVGPKGEKGDPGVGVQGPPGPPGPPGPSFRQDKLTFIDM
EGSGFSGDMESLRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSYAPGPAGLPGVPGKEGPP
GFPGPPGPPGPPGKEGPPGVAGQKGSVGEVGIPGPKGSKGDLGPVGIPGKTGMAGPPGPA
GPPGPPGPPGPPGPGFAPGFDDMEGSGMPFWPTARSSDGLQGPPGLPGLKGDPGVAGPPG
TKGEVGADGIQGIPGLPGREGAAGPPGPKGEKGTQGEKGNPGKDGVGLPGLPGPPGPPGP
VIYVSNEERAVVSTPGPEGKPGYAGFPGPAGPKGDLGSKGQQGLPGPKGEKGEPGAIFGP
DGRALGPAQKGAKGEPGFRGPPGPYGRPGHKGEIGFPGRPGRPGTNGLKGEKGEPGDASL
GFSMRGLPGPPGPPGPPGPPGMPIYDSNAFVESGRPGLPGQQGVQGPSGPKGDKGEVGPP
GPPGQFPIDFFHLGAEMKGDKGDRGDTGQKGERGEPGAAGGGFFSSSVPGPPGPPGYPGI
PGPKGESIRGPPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTVSVPGPPGPP
GPPGPPGAMGASAGQVRIWATYQTMLDKVREVPEGWLIFVAEREELFVRVRNGFRKVLLE
ARTALPHGTGNEVAALPPLVQRHEGSPYTRREHSYSTARPWRADDILVNSPRLPDPQPYP
GVPHHHSAYVHQPPARPTSSPAHTHQDFQPVLHLVALNSPLSGGMRGIRGADFQCFQQAR
AVGLAGTFRAFLSSRLQDLYSIVRRADRGTVPIVNLKDEVLSASWDTLFSGSQGQLQPGA
RIFSFDGRDVLRHPTWPQKSIWHGSDPSGRRLMENYCEAWRTEAGEATGQASSLLSGRLL
EQRAASCHNAYIVLCIENSFMTSFSK
NT seq
5301 nt
NT seq
+upstream
nt +downstream
nt
atggctcccgaccccagcagacgcctctggctgctgctgttgctgctctcctgctgcctt
gagcctgccaggcctaacaagaatcccctgaatcccttgaattccctcaggcctctggtg
tggctgtggcccaccaagaccgaagatccggtctccaagccccagatcagttcacctgtg
cagtctacagggagccccaccacgcacgtggtccaccaggatggccttacagatcagcag
acaactcctgccaaccccaggctgcccctggaggatcaggaagctggccagagtgggacc
cctacagctcctgccctccccattcccccgacggcctctgccgcgagcccggacatgaag
gaggagaatgttgccggcgttggagccaagattctgaatgtggcccagggcatccggagc
ttcgttcagctgtgggatgaggacacagctaccgaaaactctgctgggacggaaaccccg
gcttcctcgatccctacggtcctcctcactcctactgagttctccagcgctccccaggag
gatgagaccactctctggcaaagcggaggcgtttcaagttctccagatgttcagacaacc
gaggctggcaccctggctgtgcccacccagccacctccctccctgaacagcctccaggca
ccactgagaagacccccagggtcaccagcacccccaggtagagctttcctctctcctaca
cgaatcagggctcctccctgggggagccagaagccccccaggcagccccggcatctggag
gggaacagactcttgcctatggcatccaggcccagccagcagcaccaacgttctgatgtc
cactctgacattcacgggcacatacctcttctgcttcccctggtgacgggtcccctggtg
acggcttctctgagtgtgcacggtttactctctgtcccttcctctgacccctcagcccag
ctctctccagtagcagctttacctgggctccctggtgcttgggtttcccacatggctacc
tcttcaggctctgagctttccaatgactctgcagtgctgggaactggctctctgacctct
accagccgatgcctgcctctgccacccactttgaccatctgcagccacttaggtattgga
cacttctggctgcctaatcatctagaccacaaaagcagtgaggaggtagaggccactgca
caggcatgggggcacctcctccagacaaactgccatcccttccttgcctggttcttctgt
ctgctgctggctccctcatgtggcccaggcccaccacctgccctgccaccttgccgtcag
ttctgtgaggtcctggaggatggatgctggaaccacctagacgggggcaggctgcctgtc
aactgtgcctcgttcccttctcaggaggatgggtactgtgtgttcattgggccagctgca
gagaacattgctgaggaggtggggctgccacagctcctcggggaccctctgcccccgcag
atccaacagatcgaagaccccgacgttgggccagcctacgtctttggaccagactccagc
ggtggccaggtggcccagtaccacttccctagactcttcttccgtgacttttcactcctg
tttcatattcagccggccacaaaggccgcaggggtgctgtttgccatcacagacgctgcg
cagacagtggtctcgctgggcgtgaagctctcgggggtgcaagatggctaccagaacatc
tcgctgctctacacggaacacggtgccagccagacccacacgggtgccagcttccacctg
cctgcgtttgttggccagtggacacacttcgcgctcagcgtggatggaggctctgtggct
ctctatatagactgcgaagagttccagaaggtgccatttgttcggtccccacaaggcctg
gaactggagcatgactctggcctcttcgtgggtcaggctggagcagctgaccctgacaag
ttccaggggaagatctcagagctgaagatacgacagaacccccgggtgagccctgtgcac
tgcttggatgaagatgacgatgatgaagacagggcatctggagactttggaagtggtttt
gaagaaagcagcaagccacacagggaggaggatataaatctagcacccaggctcccccag
ccaccccctgtcacttccccacccctggctggaggcagcaccacagaagattctagaaca
gaaggaacggaggaagaaaccacggtagagtctataggagctgagacccttcctggcaca
agcggtacatgggaagagagtgtccagaatcatggaggtggcttgataaagggaggtctg
aagggacaaaagggggagccaggcgctccaggcttaccaggcccagctgggccccagggt
cctgcaggcccagtggtacagaaccccagtgtacaacctgtccctggagcacaaggacct
ccaggacctcaggggccaccaggaaaggatggagctccaggaagggatggtgaaccgggt
gaccctggtgaagatggaagaccaggtgacactgggcctcaaggctttccaggaacccca
ggagaagtgggccccaagggtgagaagggagatcctggtgttggagttcaaggacctcca
ggacctccagggccaccaggaccctccttcagacaggacaagctgaccttcattgacatg
gaaggatccggtttcagtggtgatatggagagcctcaggggcccacgaggcttccctggc
cccccgggaccccctggtgtcccaggactgcctggtgaaccagggcgctttggggtcaac
agttcctatgctccaggacctgcaggccttcctggtgtgcctgggaaggaagggccccct
ggatttcctggccctccgggacctccaggtcctccaggcaaagagggcccaccgggagtg
gccggccagaaaggcagtgttggcgaggtgggcatcccaggacccaaggggagcaaagga
gatcttgggcctgttggtatacctggaaagactggcatggctggaccccctgggccagct
ggaccaccaggacctccaggccccccggggccaccaggaccaggatttgcccctggattc
gatgatatggaaggctctgggatgcccttctggccaacagcccgaagctccgacgggctg
cagggacctccggggttgccaggactcaagggggatcctggagtggcagggccacctgga
accaagggagaagtgggagcagatggaatccagggcatccctggcctcccaggaagagag
ggtgcagctggccccccgggaccaaaaggagagaaagggacccagggagaaaagggaaac
ccaggaaaagacggagtggggctgccaggcctccctggccccccaggacccccagggcct
gtgatctatgtgtcaaatgaggagagagcagtagtgagcacgccaggacctgagggcaag
ccagggtacgcaggctttcctggacctgccgggccgaagggtgaccttggttccaaaggc
cagcagggtcttccagggcccaagggtgagaaaggcgagccaggtgctatctttggccct
gatggccgagccctgggccctgcccagaaaggagccaagggagaaccaggcttccgagga
cccccgggtccgtatgggcgacctgggcacaagggtgaaatcggcttccctggacggccg
ggtcgtcccggaacaaatggattaaagggagagaaaggagagcctggagatgccagcctt
gggttcagcatgaggggattgcctggcccccctggacctccaggccccccaggtcctccg
ggaatgcccatctatgacagcaatgcatttgtggagtctggccgacctggactaccagga
cagcaaggtgtgcaggggccttcaggaccaaagggtgacaaaggagaggtgggcccacct
gggcctccagggcagttccccatcgacttcttccacctgggagcggaaatgaagggtgac
aagggagaccgaggggacactggacagaaaggagagcggggagaacctggggctgctggt
ggtggattcttcagctcaagtgtgcctggaccacctggtccgcctggctaccctggcatt
ccgggtccaaagggagagagcattcgcggtccacctggccctcctggccctcagggacct
cctggtattggctatgaggggcgtcagggacccccaggaccgccaggaccgccaggacct
ccctcgttccctggtcctcataggcagactgtcagtgttcctggtcctccaggccctcct
ggccctccgggtcccccaggagccatgggtgcctccgctgggcaggtgaggatctgggcc
acataccagaccatgctggacaaggtacgcgaggtgccggagggttggctcatcttcgtg
gctgagagggaagagctcttcgtacgtgttagaaatggcttccggaaggtgctgctggag
gcccggacagctctcccacatgggacgggcaatgaggtagcggctctgcccccactggtg
cagcgtcatgagggcagcccgtatacccggcgggagcactcctattctaccgctcggccc
tggcgggcagatgacatcctagtcaactcaccacgtctgccggatccacagccttaccct
ggagttccacaccaccacagtgcctatgtgcaccagccgccagcccgccccacaagctca
cctgctcacacgcaccaggacttccagccagtgctccacctggtggcactgaacagcccg
ctgtcaggcggcatgcgtggcatccgtggggccgatttccagtgcttccagcaggcccga
gccgtggggctggctggcaccttccgtgccttcttgtcctctaggctgcaggacctctac
agtattgtgcgccgtgctgaccgggggactgtgcctatcgtcaacctgaaggatgaggtg
ctatctgccagctgggacaccctgttttctggctcccagggacaactgcagcctggggct
cgcatcttttcttttgatggcagagatgtcctgagacacccaacctggcctcagaagagt
atatggcacggctcagaccccagtgggcgcaggctgatggagaattactgtgaggcatgg
cggaccgaggccggcgaagctacaggtcaggcctcctccctgctgtcgggcaggctgctg
gaacagagagctgcgagctgccacaacgcctacatcgtcctgtgcatcgagaatagtttc
atgacctccttctccaagtag
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