Arvicola amphibius (Eurasian water vole): 119822421
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Entry
119822421 CDS
T08327
Symbol
Prpf40b
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119822421 (Prpf40b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aamp03041
]
119822421 (Prpf40b)
Spliceosome [BR:
aamp03041
]
Complex A
U1 snRNP components
U1 related factors
119822421 (Prpf40b)
Complex B
119822421 (Prpf40b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DUF4936
WW_2
RhoGAP-FF1
DTW
Motif
Other DBs
NCBI-GeneID:
119822421
NCBI-ProteinID:
XP_038197644
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Position
9:57874980..57897494
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AA seq
900 aa
AA seq
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MSVPDSGPRPPAAPAPFPPGPPMMPPPFMPPPGIPPPFPPMGLPPMSQRPPAIPPMPPGI
LPPMLPPMGAPPPLTQIPGMVPPMMPGMLMPAVPVTAATAPGADTASSAVTGTGPPRALW
SEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELLLSQCPWEEYKSDTGKPYYYNSQSQE
SRWTRPKDLDDLEALVKQESAGKQQAQQLQTLQPQPQPPQPQPDPPPIPPGPIPVPMALL
EPEPGRSEDCDVLEAAQPLEQGFLQREEGPSSSTGQHRLLQEEEEVRPEPERPGLSWSNR
EKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEK
EEARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGDLEVWAVVPERDRKEVYDDVLF
FLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQDQQLQNMD
KEDALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQTFLDELHETGQLHSMSTW
MELYPAVSTDVRFANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDILKDRGFCVEVN
TAFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEARRMRRREAAFRSM
LRQAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQVLEQTECQHLHTKGR
KHGRKGKKHHRKRSHSPSVSWQGSESDEEELPPPSLRPSKRRRRNPSESGSEPSSSLDSV
ESGGAALGGPGSPSSHLLLGSDHGLRKAKKPKKKTKKRRHKSNSPESETDPEEKAGKESE
DREQEQDKDRELRQAELPNRSPGFGIKKEKTGWDTSESELSEGELERRRRTLLQQLDDHQ
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttcccgattctggtccccggcccccagcagcgcctgcccccttcccaccgggg
ccccccatgatgccaccacccttcatgccccctccagggatcccacctccttttcctcca
atggggctgccccctatgagtcagagaccaccagccattcccccaatgccacctggcata
ctgcccccaatgcttccaccaatgggggcaccaccaccacttacacagataccaggaatg
gtacctccaatgatgccagggatgctgatgccagcggtgcctgtcactgcagcgacggct
ccgggtgcggacaccgccagctctgctgtgactgggactggccctccgagggccttatgg
agtgaacatgtggcccctgatgggcgcatctactactacaacgctgatgacaagcagtcc
gtgtgggagaagcccagcgtgctcaagtccaaggcggagctgctgctgtcccagtgtccc
tgggaagagtacaaatcagacacagggaagccgtactactacaacagccagagtcaggag
tcccgttggacccggcccaaggatctggatgacctggaggccttagtcaaacaagagtct
gcaggaaagcagcaggcccagcaactgcagaccctacagccacagccgcagccacctcag
ccacaacctgaccctccacctatacctcctggtcccatcccagtgcctatggcccttctg
gaacctgagccaggtcgaagtgaagattgtgatgtgttggaggctgcccagcccctggag
caggggttcctgcaacgggaggagggccccagcagttctactggacaacatcggctacta
caggaagaagaagaagttaggccagaaccagagagacctggcctcagttggagcaatcgg
gagaaagcaaagcaggccttcaaagagctgctaagggataaggctgtcccttccaatgct
tcatgggaacaggccatgaagatggtagtcactgatccccgttacagtgccttgcccaaa
ttgagtgagaagaagcaggcatttaatgcttacaaggcacagcgggagaaggaggagaaa
gaggaggcccggctgagggccaaggaggccaaacagaccttgcagcatttcctggagcag
catgaacgcatgacctccaccacccgctaccggcgggcagaacagacctttggggacttg
gaggtctgggctgtggtccctgagagagatcgaaaagaggtttatgatgatgtcctcttc
ttcctggctaagaaggaaaaggaacaagccaagcagcttcggcgtcgaaatatccaggcc
ttgaagagcatcctggatgggatgagtagtgtcaacttccaaaccacatggtcccaggcc
cagcagtacctcatggacaaccccagctttgctcaggaccagcagctgcagaacatggac
aaagaagatgcactgatctgctttgaggagcacatccgagctttggagagagaagaggag
gaagagcgggaacgtgcccggcttcgggagcggcgccagcaacggaagaaccgggaggcc
tttcagaccttcctggacgagttgcatgaaacagggcagctgcattccatgtccacctgg
atggagctgtacccagccgtcagcactgatgtccgctttgccaacatgctgggccagccg
ggctctactcctctggacttattcaagttctatgtggaggagttgaaggctcgattccac
gatgaaaagaagatcataaaggacattcttaaggaccggggcttctgtgtggaggtgaac
acagcctttgaggacttcgcccacgtcataagctttgacaagagggctgctgcgctggac
gcaggcaacatcaagctgaccttcaatagtctgctggagaaagcagaggcacgggagagg
gaacgggagaaggaggaggcacgaaggatgcggcgcagagaagctgcctttcgaagcatg
ctgaggcaggccgtgcctgctctggagctgggcactgcctgggaagaggtccgtgagcgc
tttgtgtgcgactcagcctttgagcagatcaccctggagtcggagcggatccggctcttc
cgagagttcctgcaggtgctggagcagactgaatgccagcacctccacaccaaaggccga
aagcatggcagaaagggcaagaaacaccatcgcaagcgttctcactcaccttcagtgagt
tggcagggttctgagtcagatgaagaggagctgcccccaccatccctccggccttctaag
cggaggcggcggaacccctcggagtctggctctgagccctcatcctcacttgactcagta
gaaagtgggggtgctgcccttggaggaccagggtccccatcgtcccaccttcttcttggg
tcagatcatggtcttcggaaagccaagaaaccaaaaaagaaaactaagaagagaagacac
aagtcgaacagtcctgagagtgagacagaccctgaagagaaagctggcaaggagagtgaa
gacagagaacaagaacaggacaaggacagggaactccggcaggcagagctccccaaccgc
tccccaggctttggaatcaagaaggagaagacaggctgggacacatcagaaagcgagctg
agtgagggggagttggagaggcgaaggcggacactcctacagcagctggatgaccaccaa
tga
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