Arvicola amphibius (Eurasian water vole): 119822482
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Entry
119822482 CDS
T08327
Symbol
Ddx39b
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03013
Nucleocytoplasmic transport
aamp03015
mRNA surveillance pathway
aamp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119822482 (Ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
119822482 (Ddx39b)
03015 mRNA surveillance pathway
119822482 (Ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamp03019
]
119822482 (Ddx39b)
03041 Spliceosome [BR:
aamp03041
]
119822482 (Ddx39b)
Enzymes [BR:
aamp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119822482 (Ddx39b)
Messenger RNA biogenesis [BR:
aamp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
119822482 (Ddx39b)
Spliceosome [BR:
aamp03041
]
Complex C
Other components
EJC/TREX
119822482 (Ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
119822482 (Ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
119822482
NCBI-ProteinID:
XP_038197778
LinkDB
All DBs
Position
9:124377070..124390598
Genome browser
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGGDGTEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaatgacgtcgacaacgagctcttagactacgaagacgatgaagtggagaca
gcggctgggggagatgggactgaagcgcctgccaaaaaagatgtcaagggctcctacgtc
tccatccacagctccggcttccgagacttcctgctcaagccagagctgctccgggccatt
gtagactgtggctttgagcatccatcagaagtccagcacgaatgcatccctcaggccatc
ctggggatggacgtcctgtgccaggccaagtcgggcatggggaagacggcagtgtttgtg
ctggccactctgcagcagctggagccagtcacggggcaggtgtctgtgctggtgatgtgt
cacactagggagctggcctttcagatcagcaaggaatatgagcgcttctcaaagtacatg
ccgaacgtcaaggtggcagtgttttttggcggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaactgcccacacatcgttgtggggactcccggccgaattctagccctggct
cgaaataagagcctgaacctcaagcacattaaacactttatcttggacgagtgtgacaag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatctttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagatccggccagtctgccgc
aagttcatgcaagatcctatggagatcttcgtggatgacgagaccaagttgacgctgcac
gggttgcagcaatactacgtgaaactgaaggacaatgagaagaaccggaagctttttgac
cttctcgatgtcctcgagttcaaccaggtggtgatctttgtgaagtccgtgcagcggtgc
attgccctggcccagcttctagtggagcagaacttcccagccattgctatccaccgtggg
atgccccaggaggagaggctctctcggtatcagcagttcaaggatttccagcggcggatt
cttgtggctaccaacctgtttggccgaggcatggacattgaacgtgtgaacatcgccttc
aactatgacatgccagaggactcggacacctacctgcaccgggtggccagggcaggccgg
tttggcaccaagggcttggctatcacatttgtgtcagatgagaatgatgccaagatcctc
aatgacgtgcaggaccgctttgaggtcaacatcagtgagctacctgatgagatagacatc
tcctcctacattgaacagacgcggtag
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integrated database retrieval system
