Arvicola amphibius (Eurasian water vole): 119822631
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Entry
119822631 CDS
T08327
Symbol
Col6a1
Name
(RefSeq) collagen alpha-1(VI) chain
KO
K06238
collagen type VI alpha
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp04151
PI3K-Akt signaling pathway
aamp04510
Focal adhesion
aamp04512
ECM-receptor interaction
aamp04518
Integrin signaling
aamp04820
Cytoskeleton in muscle cells
aamp04974
Protein digestion and absorption
aamp05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
119822631 (Col6a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119822631 (Col6a1)
04518 Integrin signaling
119822631 (Col6a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119822631 (Col6a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119822631 (Col6a1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
119822631 (Col6a1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
119822631 (Col6a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aamp04147
]
119822631 (Col6a1)
00536 Glycosaminoglycan binding proteins [BR:
aamp00536
]
119822631 (Col6a1)
Exosome [BR:
aamp04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
119822631 (Col6a1)
Glycosaminoglycan binding proteins [BR:
aamp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119822631 (Col6a1)
Hyaluronan
Extracellular matrix or blood plasma proteins
119822631 (Col6a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
YcaO
Motif
Other DBs
NCBI-GeneID:
119822631
NCBI-ProteinID:
XP_038198009
LinkDB
All DBs
Position
9:complement(116431245..116447878)
Genome browser
AA seq
1035 aa
AA seq
DB search
MGTHRPARNMRLAHALLPLLLQACWVATQDIQGPKAIAFQDCPVDLFFVLDTSESVALRL
KPYGALVDKVKSFTKRFIDNLRDRYYRCDRNLVWNAGALHYSDEVEIIRGLTRMPSGRDE
LKASVDAIKYFGKGTYTDCAIKKGLEELLIGGSHLKENKYLIVVTDGHPLEGYKEPCGGL
EDAVNEAKHLGIKVFSVAITPDHLEPRLSIIATDHTYRRNFTAADWGHSRDAEETISQTI
DTIVEMIKNNVEQVCCTFDCQAARGPPGPRGDPGYEGERGKPGLPGEKGEAGDPGRPGDL
GPVGYQGMKGEKGSRGEKGSRGPKGYKGEKGKRGIDGVDGMKGETGFPGLPGCKGSPGFD
GIQGPPGPKGDAGAFGLKGEKGEAGVDGEAGRPGSSGPTGDEGDPGEPGPPGEKGEAGDE
GNAGPDGPPGERGGPGERGPRGTPGVRGPRGDPGEAGPQGNQGREGPVGIPGDPGDAGPI
GPKGYRGDEGPPGPEGLRGAPGPAGPPGDPGLMGERGEDGPPGNGTEGFPGFPGYPGNRG
PPGINGTKGYPGLKGDEGEVGDPGEDNNDISPRGVKGAKGYRGPEGPQGPPGHVGPPGPD
ECEILDIIMKMCSCCECTCGPIDILFVLDSSESIGLQNFEIAKDFIIKVIDRLSKDELVK
FEPGQSHAGVVQYSHNQMQEHVDMRSPNIRNAQDFKEAVKKLQWMAGGTFTGEALQYTRD
RLLPPTQNNRIALVITDGRSDTQRDTTPLSVLCGPDIQVVSVGIKDVFGFVAGSDQLNVI
SCQGLLSQGRPGISLVKENYAELLDDGFLKNITAQICIDKKCPDYTCPITFSSPADITIL
LDSSASVGSHNFETTKVFAKRLAERFLSAGRTDPSQDVRVAVVQYSGQGQQQPGRAALQF
MQNYTVLASSVDSMDFINDATDVNDALSYVTRFYREASSGATKKRLLLFSDGNSQGATAE
AIEKAVQEAQRAGIEIFVVVVGPQVNEPHIRVLVTGKTAEYDVAFGERHLFRVPNYQALL
RGVFYQTVSRKVALG
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggggacccacaggccagccagaaacatgaggctggcccacgctctgctgcccctgctg
ctacaggcctgctgggtggccacacaggacatccagggccccaaggctattgccttccaa
gactgccctgtggatctattcttcgtgctggatacctcggaaagtgtggccttgaggctg
aaaccctatggggccctggtggacaaggtgaagtccttcaccaagcgctttatcgacaac
ctgagagacaggtactaccggtgtgaccgtaacctggtttggaatgcgggtgccctgcac
tacagtgacgaagtagaaatcatccgagggctcacgcgcatgcccagtggccgcgatgag
ctcaaggctagcgtggatgcgatcaagtacttcggcaaaggcacctacaccgactgcgcc
attaagaaggggctagaggagctgctcatagggggctcccacctcaaggagaacaagtac
ctgatcgtggtgaccgatgggcaccccctagagggctacaaggaaccatgtgggggcctt
gaagatgcagtcaacgaggccaagcatctgggcatcaaagtcttctctgtggccatcaca
cctgaccacctagagccacgtctaagcatcatcgccacagaccacacataccggcgcaac
ttcacagcggcggactgggggcatagccgcgatgccgaagagaccatcagccagaccatt
gacaccattgtggaaatgattaaaaataacgtggagcaagtgtgctgtacctttgactgc
caggctgccagaggacctcctggtccccgaggtgaccccgggtatgagggggaacgagga
aagccaggtcttcccggagagaaaggagaagctggagaccctggaagacctggagatctt
gggccagtcgggtaccagggtatgaagggagaaaaggggagccgcggagagaagggctcc
cgaggaccgaaaggctacaagggtgagaaaggcaaacgtggcatcgacggggtagacggc
atgaagggggagacagggtttccaggactaccaggctgcaagggctctccaggattcgat
ggcattcaaggacccccaggtcccaagggtgatgctggtgcctttggattaaaaggagag
aagggggaagctggagtggatggcgaggctgggagaccaggaagctcagggccaactgga
gatgagggagatccaggagagcctggtccccccggagagaaaggagaggctggtgatgag
gggaatgctggcccagatggaccccctggagagaggggtggccccggtgaaagaggacct
cgggggacccctggtgtgaggggcccaaggggagacccgggtgaagctggaccacaaggt
aaccaaggaagagaaggccccgtcggcatccctggagatccgggtgacgctggcccaatt
ggacctaaaggataccgaggtgatgagggtcctccaggccctgagggtctcagaggagct
ccaggacccgctggacccccgggagacccgggactgatgggtgaaaggggtgaagatggt
ccacccggaaatggcacggaaggtttccccggcttccctgggtatccaggcaacagaggc
cctcctgggataaatggaacaaaaggctaccctggtctcaagggagatgagggtgaagtt
ggagacccgggagaggataacaatgacatttcaccccgtggggttaaaggagcaaagggg
taccgaggtcccgaaggaccccagggacctccaggacacgtgggaccacctggcccagat
gagtgcgagattttggacatcatcatgaaaatgtgctcctgctgtgagtgcacatgcggc
cccatcgacatcctcttcgtgctggacagctccgagagtattggcctgcagaactttgag
attgccaaggacttcatcatcaaggtcattgaccggctaagcaaggatgagttggtcaag
tttgagccaggacagtcacacgcgggtgtggtgcagtacagccacaaccagatgcaagag
cacgtggacatgcgaagccccaacatccgcaatgcccaggacttcaaagaagccgtcaag
aaactgcagtggatggctggcggcacgtttacaggagaagcgctgcagtacacccgggat
cggctgcttccacccactcagaacaaccggatcgctctggtcatcacagacgggcgctct
gacactcagcgggacaccacaccactcagtgtgctttgtgggccagacattcaggttgtt
tctgtgggcatcaaggatgtgttcggctttgtcgcgggctccgaccagctcaacgtcatt
tcctgtcaaggcctgttgtctcaaggccggccaggtatctccctggtgaaggagaactat
gccgagcttctagatgacggctttctgaagaacatcacagcccagatctgcatagataag
aagtgtccagattatacctgtccaatcacattctcctctccggctgacatcaccatcctg
ttagatagctcagccagcgtcggcagtcacaactttgaaaccaccaaggtcttcgccaag
cgcctagctgagcgcttcctgtcagcaggcaggacagatccctcccaggatgtgcgggta
gccgtggtccagtatagtggccaaggccagcaacagccggggagggcagctcttcagttc
atgcagaactacacagtgctggccagctccgtggacagcatggatttcatcaacgatgcc
acggatgtcaacgacgccctgagctatgtaacgcgcttctaccgggaagcctcatcaggg
gccaccaagaagagactcctgttgttttcagatggcaactcacagggagccacagcagag
gccattgagaaggctgtgcaggaggcccagcgtgcaggcatcgagatctttgtggtggta
gtgggaccccaggtgaatgagccccacatccgcgtgctcgtcaccggcaagaccgcggag
tatgacgtggcttttggtgagcgccacctattccgtgtacccaactaccaggccctgctt
cgtggtgtattctaccagacagtctccaggaaggtggcactgggctag
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