Arvicola amphibius (Eurasian water vole): 119822685
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Entry
119822685 CDS
T08327
Symbol
Col2a1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp04151
PI3K-Akt signaling pathway
aamp04510
Focal adhesion
aamp04512
ECM-receptor interaction
aamp04518
Integrin signaling
aamp04974
Protein digestion and absorption
aamp05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
119822685 (Col2a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119822685 (Col2a1)
04518 Integrin signaling
119822685 (Col2a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119822685 (Col2a1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
119822685 (Col2a1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
119822685 (Col2a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
aamp00536
]
119822685 (Col2a1)
Glycosaminoglycan binding proteins [BR:
aamp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119822685 (Col2a1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
119822685
NCBI-ProteinID:
XP_038198100
LinkDB
All DBs
Position
9:complement(56252889..56281516)
Genome browser
AA seq
1487 aa
AA seq
DB search
MIRLGASQSLVLLTLLIAAVLRCQGQDAEDAGSCFQNGQMYKDKDVWKPTPCRICVCDTG
TILCDDIHCEEKDCLNAEVPFGECCPICPADLTPASGQLGPKGQKGEPGDIKDIIGPKGP
PGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLTGNFAA
QMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGP
RGPPGPAGKPGDDGEAGKPGKAGERGLPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGE
AGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGP
AGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGNPGSPGPAGASGNPGTDGIPGAKGS
AGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQMGEPGIAGFKGEQGPKGETGPAGPQGA
PGPAGEEGKRGARGEPGGAGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGP
KGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGV
MGFPGPKGANGEPGKAGEKGLAGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGP
SGFQGLPGPPGPPGEGGKQGDQGIPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGARGL
PGTPGTDGPKGAPGPDGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGK
DGGRGLTGPIGPPGPAGANGEKGEVGPPGPSGSTGARGAPGERGETGPPGPAGFAGPPGA
DGQPGAKGDQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGA
AGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDTGSPGRAGDPGLQGPAGPSGEKGEPGD
DGPPGSDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGP
VGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGALGAPGAPGPPGSPGPAGP
TGKQGDRGESGAQGPMGPSGPAGARGIPGPQGPRGDKGESGEPGERGLKGHRGFTGLQGL
PGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGSNGIPGPIGPPGPRGRSGETGPAGP
PGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQVMRADEAASSLRQHDVEVDATLKS
LNNQIESIRSPDGSRKNPARTCQDLKLCHPEWKSGDYWIDPNQGCNLGRHESFFCNMETG
ETCVYPNPATVPKKKLVEQQGQGKKHVWFGETMNGGFHFSYGDGNLAPNTANVQMTFLRL
LSTEGSQNITYHCKNSIAYLDEASGNLKKALLIQGSNDVEMRAEGNSRFTYTALKDGCTK
HTGKWGKTVIEYRSQKTSRLPIVDIAPMDIGGPDQEFGVDIGPVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcctcggggcttcccagtcgctggtactgctgacgctgctcatcgccgctgtc
cttcggtgtcaaggccaggacgccgaggatgctggcagctgctttcagaatgggcaaatg
tataaagataaggatgtatggaagcccacgccctgccgcatctgtgtgtgcgacactggg
acgatcctctgcgacgacattcactgcgaagaaaaggattgcctcaacgccgaggtcccc
ttcggagagtgctgtcccatctgcccagctgacctcacccctgccagtggacaactaggg
ccaaagggccagaaaggagagcctggagacatcaaggatatcataggacccaaaggacct
cctggccctcagggacctgctggtgaacaaggacccagaggtgatcgtggtgacaaggga
gaaaagggtgcacctggacctcgtggccgagatggagagcctggtacccctggaaatccc
ggtcctcctggccctccagggccccctggtccccctgggctcactggaaacttcgccgcc
cagatggctggaggctttgatgagaaggctggaggtgcccagatgggggtgatgcaaggt
ccaatgggccccatgggacctcgaggacccccaggccctgccggtgcccctggccctcaa
ggatttcaaggcaatcctggtgaacctggcgagcctggtgtctctggtcccatgggtccc
cgtggtcctccaggccctgctggaaaacctggcgacgatggtgaagctgggaaacctgga
aaagctggggaaagaggccttcctggccctcagggtgctcgcggattccccggaacccca
ggccttcctggtgtcaaaggtcacagaggttacccagggctcgatggtgctaagggagaa
gctggtgctccaggtgtgaagggcgagagtggttctcctggggagaatggttctccgggc
ccaatgggtccccgaggcctgcctggtgagagaggacggactggtcctgctggtgctgcc
ggtgctcggggcaacgatggccagccaggtcctgctggacctccgggtcctgtcggtcct
gcaggtggtcccggcttccctggagctcctggtgccaagggagaagctggccccactggt
gctcgtggtcctgaaggtgctcaaggtcctcgtggcgagcctggcaatcctgggtcccct
gggcccgcaggtgcttctggtaacccaggaacggatggcatccccggagccaaaggatct
gctggtgctcctggaattgctggtgcccctggtttcccagggccccgtggtcctcctggt
ccccaaggtgcaactggtcctctgggccccaaaggtcagatgggtgagcctggcattgct
ggcttcaaaggtgaacaaggccccaagggagaaactggtcctgctgggccccagggagcc
cctggtcctgctggtgaggaaggtaaaagaggcgctcgaggagaaccaggcggtgctggg
cccatcggtccccctggagaaagaggtgcccctggcaaccgtggtttccccggtcaagat
ggtctggcaggacccaagggtgcccctggagaacgagggcctagtggcctggctggtccc
aagggagccaatggtgaccctggtcgtcctggagaacctggccttcctggagcccggggt
cttacgggtcgtcctggagatgctggtccgcaaggcaaagtcggtccttctggagcccct
ggtgaagatggtcgtcctggacctcctggtcctcagggagctcgtggacagcctggtgtc
atgggtttccctggccccaaaggtgccaatggcgagcctggcaaagctggtgagaaggga
ctggctggtgctcctggtctgagaggtctgcctggcaaagatggtgagacaggtgccgca
ggaccccctggccctgccggacctgctggtgaacgaggcgaacagggtgctcctgggcca
tcaggattccagggacttcctggccctcccggtcccccaggtgaaggtggaaaacaaggt
gaccagggtattcctggtgaagcaggagctcctggccttgtgggtcctaggggtgaacga
ggtttcccaggtgaacgtggatctcctggtgcacaaggccttcagggtgcccgtggtctc
cctggtactcctggtactgatggtcccaaaggtgcacctggtccagatggcccccctggg
gctcagggtcctccaggtctacaaggaatgcctggcgagaggggagcagctggtattgct
gggcccaagggagacagaggcgacgttggtgagaaaggcccagagggggctcctggaaag
gatggtggacgaggtctgactgggcccatcgggcccccaggcccggcaggcgccaatggc
gagaagggggaagttggacctcctggcccttcaggaagtactggtgctcgcggcgctccg
ggtgaacgcggagaaactgggccgcctggacctgctggattcgctgggcctcctggtgct
gatggccagcctggtgccaagggtgatcaaggagaggccggacagaaaggagatgctggt
gcccccggcccccaaggcccctctggagctcctgggcctcagggtcctactggagtgact
ggtccgaagggagcccgaggcgcacaaggccccccaggagccaccggattccccggagct
gctggccgcgttggaccgccaggctctaatggcaaccctggaccccccggtccccctggt
ccttctggaaaagatggccccaaaggtgctcgaggagacacaggttcccctggccgagct
ggtgaccctggacttcaaggccctgcaggaccttctggcgagaaaggagaacctggagac
gacggtccccctggttctgacggtcctccaggtccccagggtttggctggtcaaaggggc
attgttggtcttcctggacagcgtggtgagagaggattccctggccttcctggcccatcg
ggtgaacctggcaagcagggtgcacctggtgcatctggagacagaggtcctcccggcccc
gtggggcctcctggcctgacaggtcctgcaggtgaacctggacgagagggcagccctggt
gctgatggaccccctggcagagatggtgcagctggagtcaagggtgatcgcggagagact
ggggcattgggcgctcctggagctcccgggcccccaggttctcctggccctgctggccca
actggcaaacaaggagacagaggagagtctggtgcacaaggtcctatgggcccctcagga
cctgctggagcccgtggaatcccaggccctcaaggcccccgaggtgacaaaggagaatct
ggagagcctggcgagaggggactgaagggacaccgaggcttcactggacttcagggtctt
cctggccctccgggtccctctggagatcaaggtgcttctggcccagctggtccctctggc
cctagaggtccacctggccccgttggtccctccggcaaagatggctccaatggaatccct
ggccccattgggcctcccggtccccgtggacgttcaggcgaaacaggccctgctggtcct
cccggaaatcctggtccccctggccctcccggtcctcctggtcccggcattgacatgtca
gccttcgctggcttaggccagagagagaagggccctgacccgctgcaagtaatgcgggcc
gacgaggcagccagctccctgcgacagcacgacgtggaggtggatgccaccctcaaatca
ctcaacaaccagattgagagcatccgcagccctgacggctcccgcaagaatcccgctcga
acctgccaggacctgaaattgtgccatccagagtggaagagcggagactactggattgac
cccaaccagggctgcaaccttggacgccatgaaagtttcttctgcaacatggagacaggc
gagacttgcgtctaccccaacccagcgactgtgcctaagaagaaactggtggagcagcaa
gggcaaggaaagaagcatgtctggtttggagaaaccatgaacggtggcttccacttcagc
tatggtgatggcaatctggctcccaacaccgctaacgtccagatgaccttccttcgtcta
ctgtccaccgagggctctcagaacatcacttaccactgtaagaacagcatagcctacctg
gacgaagcctctggcaacctcaagaaggccctgctcatccagggctccaatgacgtggag
atgagggctgagggcaacagcaggttcacgtacacggccctgaaggacggctgcacgaaa
cacaccggtaagtggggcaagactgtcatcgagtaccggtcacagaagacctcacgcctt
cccattgttgacattgcacccatggacataggaggccctgatcaggagtttggtgtggac
atagggcctgtctgcttcttgtaa
DBGET
integrated database retrieval system
