Arvicola amphibius (Eurasian water vole): 119823114
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Entry
119823114 CDS
T08327
Symbol
Pabpc1
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03015
mRNA surveillance pathway
aamp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119823114 (Pabpc1)
09123 Folding, sorting and degradation
03018 RNA degradation
119823114 (Pabpc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamp03019
]
119823114 (Pabpc1)
03041 Spliceosome [BR:
aamp03041
]
119823114 (Pabpc1)
Messenger RNA biogenesis [BR:
aamp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
119823114 (Pabpc1)
mRNA cycle factors
Stress granule specific factors
119823114 (Pabpc1)
Spliceosome [BR:
aamp03041
]
Complex C
Other components
Complex C specific factors
119823114 (Pabpc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RRM_5
RRM_10
RBD_RDR6
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
119823114
NCBI-ProteinID:
XP_038198836
LinkDB
All DBs
Position
9:complement(3058189..3070476)
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AA seq
636 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVMNPYQPAPPSGYFMAAIPQTQNRA
AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQ
RVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQ
GQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKAVNSATGVPAV
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcccccagctaccccatggcctccctgtacgtgggggacctgcacccc
gacgtgacggaggcgatgctctacgagaagttcagcccggccgggcccatcctctccatc
cgggtctgcagggacatgatcacccgccgctccttgggctacgcgtacgtgaactttcaa
caaccggcggacgcggagcgtgctttggacaccatgaattttgatgttataaagggcaag
ccagtacgcatcatgtggtctcagcgtgatccatcacttcgcaaaagtggagtaggcaac
atattcattaaaaatttggacaaatccattgacaataaagcattgtatgatacattttct
gcatttggtaacatcctttcatgtaaggtggtctgtgatgaaaatggctccaaaggctat
gggtttgtgcattttgaaacacaggaagcagctgaaagagctattgagaaaatgaatggg
atgcttctaaatgaccgtaaagtgtttgttggacgatttaaatcacggaaggaacgagaa
gcagaacttggagcgagggcaaaggagttcaccaacgtttacatcaagaactttggggaa
gacatggatgatgagcgcctcaaggatctctttggcaagtttgggcctgccttaagtgtg
aaagtaatgactgatgaaagcggaaagtccaaagggtttggattcgtcagctttgaaaga
catgaagatgcacagaaagctgtggatgagatgaatggaaaggagctcaatggaaaacag
atttatgttggtcgagctcagaaaaaagtggagcggcagacggaacttaagcgcaaattt
gagcagatgaagcaagacaggatcaccagataccagggtgttaacctttatgtgaaaaac
cttgatgatggtattgatgatgagcgtctccggaaagagttctctccgtttggtaccatc
accagtgcaaaggttatgatggagggtggtcgcagcaaagggtttggttttgtatgtttc
tcttcccctgaagaagccactaaagcagttacggaaatgaatggcagaattgtggccacg
aagccactgtatgtagctttagctcagcgcaaagaagagcgccaggctcacctcactaac
cagtacatgcagagaatggcgagtgtgagagctgtgcccaaccccgtgatgaacccctac
cagccagcacctccttcaggttacttcatggcagctatcccacagactcagaaccgtgct
gcatactatcctcctagccaaattgctcaactaagaccaagtcctcgctggactgctcag
ggtgccagacctcatccattccagaacatgcccggtgctatccgcccagctgctcctaga
ccaccatttagtactatgagaccagcttcctcacaggttccacgagtcatgtcaacacag
cgtgttgctaacacttcaacacagaccatgggtccacgtcctgcagctgctgctgctgca
gccactcctgctgtccgcaccgttccccagtataaatacgctgcgggagtccgcaatccc
cagcaacatcttaatgcacagccacaagttaccatgcaacagcctgctgttcatgtgcaa
ggtcaagaacctctaactgcttccatgttggcatctgcccctcctcaagagcaaaagcaa
atgttgggtgaacggctgtttcctcttattcaagccatgcaccctactcttgctggtaaa
atcactggcatgcttttggagattgataactcggaattacttcacatgcttgagtctcca
gagtctctccgctcaaaggttgatgaagctgtggctgtactacaagcccaccaagcaaaa
gaggctgcccagaaggcagtgaacagtgccaccggtgtcccagccgtttga
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