KEGG   Arvicola amphibius (Eurasian water vole): 119823289
Entry
119823289         CDS       T08327                                 
Symbol
Mdc1
Name
(RefSeq) mediator of DNA damage checkpoint protein 1 isoform X1
  KO
K20780  mediator of DNA damage checkpoint protein 1
Organism
aamp  Arvicola amphibius (Eurasian water vole)
Brite
KEGG Orthology (KO) [BR:aamp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:aamp03400]
    119823289 (Mdc1)
DNA repair and recombination proteins [BR:aamp03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    119823289 (Mdc1)
SSDB
Motif
Pfam: BRCT_2 FHA RTT107_BRCT_5 BRCT Yop-YscD_cpl
Other DBs
NCBI-GeneID: 119823289
NCBI-ProteinID: XP_038199139
LinkDB
Position
9:124783050..124799335
AA seq 1691 aa
MENTQVIDWDPEEEETEISNGSLGHSLEPIGRLRLFSSAHGPERDFPLYLGKNVVGRSPD
CSVTLPFPSISKQHAVIEISAYNKAPILQDCGSLNGTQLVKPPKVLTPGVSHRLKDQELI
LFADFPCQYRRLNVPPPLVSRGFLTIEGTPRIQGESQTSRVLLAEDSEEEVDFPSGRCVA
NGSRNPTSPSATVVPESDEEACSPAPRAPGLSLPFDVGSDTDEEQGQQLAVGGSSSARAG
AAAAEAKQPEGKRMTAGILLGQAQPTEPKFKDTEVKSEAGNGAAQVGSVLERSLTLGEDS
DTDVEGEGVPVTPVVGPGKKQVLLGVGTGDPGAPGVAPLQGGPATAMEEGRMPVAVPPET
NHTPMVIDSDTDEEGDVSAALTLAHLKERGMTLWSRDSGVEEARSQPQVLVERSQSASGR
DSDTDVEEGRREVVPDSPVDIDEALTVRHSESQPPHRARDGGEDVDMNSPGGHLEGNQAS
SATVDSSAAQVEGEFPPEPAVTLGEKHQLPLEEAQPSEEAWEATVGEGSSSAVADVRKSQ
QPVAEDAGTECATAVSEQESTLELGAQSRSPTAPAEQVVVYTGPRGDPTQPQREGAQTPT
GREKGAQMGRTKNAKDCCDESEDLCLPATQCFVERESQSSEAVQGLEDEPTQGFPCALPQ
EPGPSHHSLQTPGAGALDVPWEVLATQPFCLREPEASEPQLIATHLEARGSPPSLLSAPP
GHQHLSHTELLGVQGREIQTMEKAMGIPKETADRVTPEREPLERKIRERDVMGEELPQVI
EDREPKTVPARDSQGQESNKGEGGDPEGNRESLKVEMEMSKDTQKREREVGKPEPEREWE
PAGLEVNLDRGVAEGGSHDQKDQIASPTLKPGLGMGDLEGLTSAPPVSGSQGDGGKGDPV
SPGRQQRGRLNCKMTSAGKASRGDPEPPAHCLLSPVPEASAPPQSLLTSQSPKQSPPPPL
MSSPSEPHLPESLHTEPNVRPRRSSRMTPSSSAALKPNTTCPKNLPAAPRPTSQVTRGRA
NKSSARTPEVIVPTDSELQPPTSTEQPAIPRPTSQVTQGSTDSFFDKTPESVLTGPEIQP
PTTEQPVTPNPTPRATRGRPSRSSIKTPELNVPTSSELQPPTSTEQAVMPKPTSRATRGR
PHKSVRTPEPVVPTVSELQPPTSTEQAVIPKPTSRATRGRPRKSIRTPEPVVPTDPEFQP
AISTEQPVPPEPSSQGRARRSSVRTLEASISTAPELQPFTSREPPAPKPTALGTRGRTCK
PSIEDSKSVEPVAPDFEPPISTDHLVTPEVTDESITLKSSPLSASPLSTTPELEPGPPEP
IPQGSRRRRRKAAGKQGSHIVPIDHEPYSAPSKPESQSSTNQSSGTLEAAELITVAPEAA
IAQVPETPPHVPLMQNEAAGRSGFTPKPQAEASRVRKEPSTTPDSPLQKRPRRQVPQMTI
VPKEEDPPETPVKEEPQERAIPAPGKRKRGRAEDETQGNASRSRRAKPNQEAVAPKVLFT
GVMDSRGERAVLALGGSLASSVNEASHLVTDRIRRTVKFLCALGKGIPILSLNWLYQSRK
AGYFLPPDDYLVTDPEQEKNFSFSLRDALSRAREQKLLEGYEIHVTPRVQPPPAQMAEII
GCCGGTVLPSMPHSYKPQRVVVTCTEDLPCCAVPARLGLPLLSSEFLLTGVLKQEATPEA
FVLSNLEMLPS
NT seq 5076 nt   +upstreamnt  +downstreamnt
atggaaaacacccaggttattgactgggatcctgaagaagaggagacagaaatatccaat
gggtccctggggcatagcttggagcctatagggcggctgcgtctcttcagtagtgctcat
ggaccagaaagagatttccctctctaccttggcaagaatgtagttggcagaagccctgac
tgctctgtgaccctgccttttccatccatctctaaacagcatgcagtgattgagatctct
gcttacaacaaagcccccatcctccaagattgtgggagcctcaatggcactcaactcgta
aagcctcctaaggtcctaacccctggagtgagccatcgtctgaaggaccaggaattaatt
ctgtttgcagactttccctgccagtaccgtcgcttgaatgtccctccacctttggtctct
cggggatttctaactatagaagggacccccagaatacagggagaatcccagacctccaga
gttttgttggctgaggattcagaggaggaagtggattttccttctggaaggtgtgtggca
aatggatcaagaaatccaacatccccatcagcaacagttgttccggagagtgatgaagag
gcatgttctccagccccgagagcccctgggctgtctctgccctttgacgtgggcagtgac
acagatgaagagcagggtcagcagctggcagtgggaggatcctcttcagctagggctggt
gctgctgctgcagaggctaagcagcctgaaggtaaaagaatgacagctggcatcctgctg
ggacaggcgcagcctactgagccaaagttcaaggacacagaagtcaagagtgaggctggc
aatggagcagctcaggtcgggtcagttctggagaggagcctcactcttggggaggacagt
gacacagatgtggaaggagagggggttcctgtgaccccagttgtaggtcctgggaagaag
caagtcctgcttggagttggtacaggggatcctggagcacctggagtggcacctctgcag
ggcggcccagccacagctatggaggagggcaggatgccagtggctgtccctccagagaca
aaccacacacccatggtgattgacagcgacacggacgaggagggtgacgtctcagcagcg
ctcaccctggcccatctgaaagagagggggatgactttgtggagcagagactcaggcgtg
gaagaggccaggtcccagccccaggtccttgtagagcgaagccagagtgcctctgggaga
gacagtgacacagacgtggaggagggaaggagagaagtggtccctgacagccccgtggac
atagatgaggctctcactgtcaggcattcagagagccagcctccccatcgagccagagat
ggaggtgaggatgtggacatgaactcccctggcggccacctagagggaaatcaggcctcc
tctgccacagtggacagcagtgctgcacaagtggagggggaattccccccagagccagct
gttaccctgggggagaagcaccagctgcctctagaggaagcccagccttctgaggaggcc
tgggaagcaactgtgggggaaggctcatcttcagcagtggcagatgtaagaaagagccag
cagccagtagcagaagatgctgggacagagtgtgctacagctgtttctgagcaggagagc
actcttgagttgggggcccaaagcaggtcacctactgcaccagcggagcaggtagtggtg
tatacaggtcctcgaggggatcccacacagccacagagagagggagcccagactcccaca
ggaagagagaaaggagcacaaatgggcaggaccaagaatgccaaagactgctgtgacgaa
tctgaagatctgtgccttccagctacccagtgctttgtagaaagggagagccagagctca
gaagctgtccagggtttagaagatgagcctacccagggcttcccatgtgctctgccccaa
gagcctgggccttcccatcatagccttcagactccaggtgcaggcgccctggatgtgcct
tgggaggttttggctacacagccattttgtctgagagaacctgaggcctctgaaccccag
ctcatcgccacccaccttgaagctcgtggatctcctccatctctacttagtgcaccacca
ggacaccagcatctgagtcacacagagctgttgggagttcaaggcagagagatacaaact
atggagaaagccatgggtataccaaaggaaacagcagacagggtgacccctgagagagag
ccattggaaaggaaaatcagggagagagatgtgatgggggaagaactacctcaggtgata
gaggacagagagccaaagacggtgccagctagagacagccagggacaggagtctaacaag
ggggagggtggggatcctgaaggaaatagggagagtttgaaggtagaaatggagatgtcc
aaagacacacagaagagagagagagaagtagggaaaccagaaccagagagagagtgggag
ccagctggtttagaagtgaacctagatagaggggtggctgagggagggagccatgaccag
aaagatcagattgccagtccaacactaaagcctggacttggcatgggagaccttgaggga
ctgacatcagccccgccagtctctgggagccagggagatggaggaaagggagaccccgtg
agccccgggaggcagcagagaggccgcttgaattgcaagatgacatctgctggaaaggct
tccaggggtgatccagaaccaccagcccattgcctgctttctccagtgcctgaagcttca
gctccaccccagagtctcctcacctctcagagcccaaagcagtctccgcctccgcctttg
atgtcttccccttctgagccacaccttcctgagagtcttcacacagagcctaatgtcagg
cctcggaggtcctccaggatgaccccctcatcctctgctgcccttaagcctaacactacc
tgccccaaaaacctgcctgccgcccccagaccaacatctcaggtcactcggggcagggca
aataagtcctctgccaggaccccagaagtgattgtccctacagactctgagctccagcct
cccacctccacagaacaacctgccatccccagacccacatctcaggtcactcagggcagc
acagatagtttctttgataagacacctgaatcagttctcacaggtcccgaaatccagcct
cccaccacagaacagcctgttaccccaaaccctacacctcgggccactcggggcaggcca
agtaggtcttccattaagaccccagaactaaatgtccccactagctctgaactccagcct
cccacctccacagaacaagctgtcatgcctaaacccacatctcgggccacccggggcagg
ccacataagtctgtcaggaccccagaaccagttgtccccactgtctctgaacttcagcct
cccacctccacagaacaagctgtcatacctaaacccacatctcgggccaccaggggcagg
ccacgtaagtctatcaggaccccagaaccagttgtccccactgaccctgaattccagcct
gccatctccacagaacagcctgtcccccctgagccctcatctcagggcagggcacgtagg
tcttctgtcagaactcttgaagcaagcatctccacagcccctgaacttcagcctttcaca
tctagagaacctcctgcccccaagcccacagctctgggcactcggggaaggacatgtaag
ccctccattgaggattctaaatcagttgaaccagtagcccctgattttgagcctcccatc
tccactgaccatcttgttacccctgaggtgacagatgagagcattacactaaagtcttca
ccactgagtgcttccccactgtccaccacccctgaactggaacctggtcccccagagccc
attcctcaaggcagtcgccgaaggaggcggaaggctgctgggaaacagggctcccacata
gttcccattgaccatgagccttactctgcaccctctaaacccgagtcccagtcttcaacc
aaccaaagctcagggacattagaagcagctgagttgattacagtcgctcctgaggctgcc
attgcccaggttccagagaccccacctcacgttcctctgatgcaaaacgaagcagctggg
agatcagggttcactcccaaaccgcaggctgaggcttctcgagtccgcaaggagccttcc
actaccccagactcaccacttcagaaacgtccccgaagacaagttccccagatgaccatc
gtccccaaggaagaagatcccccagaaacgccagtgaaggaagagcctcaggagagagca
attccggcaccaggcaagagaaagaggggccgtgcagaagatgagacccagggaaacgca
agtcgaagccggcgggctaaacctaaccaagaagcagtagctcccaaggtcctgttcaca
ggagtcatggattcccgtggagagcgtgcagtcctggctctgggaggcagtctggccagc
tcagtgaacgaggcttcccacttggtcaccgatcgcatccgcaggacagtcaagttcttg
tgtgctctggggaagggtatccccatcctctccctgaactggctgtatcagtccagaaag
gccggttacttcttgccccctgatgactacttggtgactgatcctgaacaagagaagaat
tttagcttcagccttcgggatgccctgagccgggctcgggaacagaaactactggagggc
tatgagattcatgtgacccctcgcgtgcagccacctccagctcagatggcagagatcatt
ggctgctgcggaggcaccgtcctgcccagcatgccccattcctacaagcctcagcgagtt
gtcgtgacctgcactgaagaccttccttgctgtgctgtccctgctcgcctggggctgccc
ctcctctcttctgagttcctcctaactggtgtgctgaagcaggaagccacaccagaggcc
tttgtcctctccaatttggaaatgttaccttcctaa

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