Arvicola amphibius (Eurasian water vole): 119823741
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Entry
119823741 CDS
T08327
Symbol
Col9a1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(IX) chain
KO
K08131
collagen type IX alpha
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp04151
PI3K-Akt signaling pathway
aamp04510
Focal adhesion
aamp04512
ECM-receptor interaction
aamp04820
Cytoskeleton in muscle cells
aamp04974
Protein digestion and absorption
aamp05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
119823741 (Col9a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119823741 (Col9a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119823741 (Col9a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119823741 (Col9a1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
119823741 (Col9a1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
119823741 (Col9a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
aamp00535
]
119823741 (Col9a1)
Proteoglycans [BR:
aamp00535
]
Extracellular matrix (ECM) proteoglycans
Others
119823741 (Col9a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
119823741
NCBI-ProteinID:
XP_041911695
LinkDB
All DBs
Position
9:81894985..81980142
Genome browser
AA seq
963 aa
AA seq
DB search
MKTRWKIPVFFFACSFLGPWVSATPKRRPRFPASPNGGSELCPKIRIGQDDLPGFDLISQ
FQVERAASRRTVQRVVGSTALQVAYKFGSDVDFRIPTRHLYPSGLPEEYSFLTTFRMTGS
TLEKNWNIWQIQDSSGKEQVGVKINGQTKSVSFSYKGLDGSLQSADFSRLPSLFDSQWHK
IMIGVERTSATLFLDCVRIESLPIKPRGQIETDGFAVLGKLADNPRVSVPFELQWMLIHC
DPLRPRRETCHELPVRSTPSQTTDDERGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGPV
GPPGPPGDPGKPGAPGKPGTPGADGLTGPDGSPGSVGPRGQKGEPGVPGSRGFPGRGIPG
PPGPPGTTGLPGELGRVGPSGDPGKRGPPGPPGPPGPSGTIGFHDGDPLCPNSCPPGRSG
YPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGPQGLRGITGTIGDKG
EKGARGLDGEPGPQGIPGAAGDQGQRGPPGEAGPKGDRGAQGSRGIPGSPGPKGDTGLPG
VDGRDGIPGMPGTKGEAGKPGPPGDVGLQGLPGVPGIPGVKGVAGEKGNTGAPGKPGQLG
SSGKPGQQGPPGEVGPRGPRGLPGSRGEVGPEGSPGITGKLGPRGSPGLPGLPGPPGLPG
MKGDRGVFGEPGPKGEQGASGEEGEAGERGDLGDMGSPGPKGSVMVTPGEPGLRAPKESR
GLPGMEGPRGPPGPRGVQGEQGATGLPGIQGPPGRATTDQHIKQVCMRVIQGKSMAGVET
SPLPALASLAFISVGRARLGNQLLRREMLIPVLFLPKSPQETRCRSPQAFPGSPGSSTGP
PGPPGENGFLPGQMGIAVVSLAIKGPPGARGLRGPKGDLGEKGERGPPGRGPKGLPGAIG
LPGDPGPASYGKNGRDGEQGPPGVAGIPGVPGPPGPPGPPGFCEPASCTLQSGQRAFSKG
PDK
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atgaagacccgctggaagattccagttttcttctttgcatgcagttttctgggaccctgg
gtatctgcaactcctaagcgtcgtccaaggtttcctgccagtcccaatggtggaagtgaa
ctgtgtcccaagatcaggattggccaagatgacttgccagggtttgacctgatttctcag
ttccaagtcgagagagctgcatcccgaagaacggtccagagggtggtggggtccacggca
ctacaagtggcttacaagtttgggagtgatgtagacttcaggatcccaacaaggcatttg
tatcccagtggactgcctgaagaatattccttcttaaccactttccggatgactggaagc
acacttgaaaagaactggaacatttggcagatccaggactcctcagggaaggagcaagtt
ggcgtgaagataaacggccaaacaaagtctgtctcgttttcctataaaggactggatgga
agtctccagtcggcagacttttcacgtttgccgtccttgttcgactcccagtggcataag
atcatgattggcgtggagaggaccagtgccactctttttcttgactgcgtcaggattgag
tccttacctataaagccaagaggccagattgagacggatggcttcgctgtgctggggaag
cttgcggacaatcctcgggtttctgttccttttgaactccagtggatgctgatccattgc
gacccactgagacccaggagagaaacgtgtcatgagctgccagtcagaagcacgcccagc
cagaccactgatgacgagagaggtcctcctggtgagcaggggcctccagggcctcctgga
cctcctggagttccgggcatagatggcattgatggtgaccgaggtccaaagggtcccgtg
ggccctccgggtcctcctggagacccgggcaagccaggagcgccaggcaagccaggcaca
ccaggcgctgatggattaacaggacctgatggatcccctggctctgttggaccaagggga
caaaaaggagaacctggcgtgcctggatctcgtggttttccgggccgtggcattccagga
ccccctggtcctcctgggaccacaggacttcctggagaacttggccgtgtaggacctagt
ggtgaccctgggaaaagaggaccaccaggcccccctggccccccaggacccagtggaaca
attggatttcatgatggagacccattgtgccccaattcctgcccaccaggtcgctctgga
tacccaggcctcccaggcatgcggggtcataaaggggcaaaaggagaaattggtgaaccg
ggacgacaaggacacaagggtgaagaaggtgaccagggagaactgggagaagttggagct
caaggacccccaggacctcaaggtctgagaggcatcactggaacaattggagacaaagga
gaaaaaggtgctcggggattagatggagagcccgggccgcaggggattccaggtgcagct
ggtgaccaaggacagcggggccctccaggagaagcaggtcccaagggagacaggggtgct
caaggttcccgaggaattcctggatcccctgggccgaaaggagacacgggcttgccaggt
gtagatggtcgcgacggaatacctggaatgccgggaacaaagggtgaagcggggaagcct
ggacctccgggtgatgtgggcttgcaggggttgccgggtgtacctgggattcctggggtg
aaaggcgtggccggtgaaaagggtaacacaggtgctcccggaaagcctggccagttggga
agttcaggaaaaccaggccagcaagggcctccaggagaggtgggacctcgaggacccagg
ggtctccctggaagtagaggggaagtaggaccagaagggtccccaggcataacaggcaaa
ctgggacctcgtgggagccctggccttcctggcttgcctgggccgcctggacttcctgga
atgaaaggcgacaggggtgtatttggcgaaccaggtcccaagggtgagcagggtgcctct
ggtgaagaaggtgaagctggagaaaggggtgatcttggagatatgggatcacctggccca
aaaggatctgtaatggtaacccctggggaacctggcctgagggccccgaaggagtccaga
gggcttcctggaatggaaggaccaagaggaccacctggaccccggggcgtgcagggagag
caaggtgccactgggctgcctggtatccagggccctccgggcagagcaacaacagatcag
cacatcaaacaggtctgcatgagagttattcaaggtaaatcaatggcaggggttgaaaca
tctccactgcctgctcttgcttctttagcttttatttctgtagggcgtgcaaggctaggt
aaccagcttttaaggagggagatgttgataccagttctgtttttacctaagagtcctcaa
gagaccagatgcaggagccctcaggcctttcctgggagccctgggtcctccactggacct
ccaggcccccctggagagaatggtttcctccctggtcagatgggaattgccgtggtctcc
ctggccattaagggtccccctggcgctcgtggcttaagaggacctaaaggtgacttggga
gagaaaggagaacgtggccctccaggaagaggtccgaagggtttgcctggagctataggt
ctcccaggtgatcctggccctgccagttatggaaaaaatggccgagatggagaacaaggt
ccgccaggagtggcaggaattcctggtgtgcctggacccccaggtcccccaggccctcct
ggtttctgtgagccagcctcttgcaccctgcagtctggtcaacgtgcctttagcaaaggg
cctgacaagtga
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