Arvicola amphibius (Eurasian water vole): 119824514
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Entry
119824514 CDS
T08327
Symbol
Scaf4
Name
(RefSeq) SR-related and CTD-associated factor 4 isoform X2
KO
K13167
SR-related and CTD-associated factor 4
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aamp03021
]
119824514 (Scaf4)
03041 Spliceosome [BR:
aamp03041
]
119824514 (Scaf4)
Transcription machinery [BR:
aamp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119824514 (Scaf4)
Spliceosome [BR:
aamp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
119824514 (Scaf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
119824514
NCBI-ProteinID:
XP_038200615
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All DBs
Position
10:8049903..8109514
Genome browser
AA seq
1176 aa
AA seq
DB search
MWCQNLLHRTLFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKV
PGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKN
GVFKIEIIQPLLDMAAGASNAIPVAENVTNNEGSPPPPVNASSELAQAPTNSMPAVPQLP
SSDAFAAVAQLFQTTQGQQLQQILQTFQQPPKPQSPALDNAVMAQVQAITAQLKTAPTQP
PEQKAAFPPPEQKTAFDKKLLDRFDYDDEPEAVEDAKKEDAAVTAAASAAAAAAVPVPPT
PTVATPAIAPAVPVPSTTSPPPPQVPFGYPGDGMQQTAYTQHQSMDQFPPRMMGMQQDTV
HHQVSLPPNGQMPGFGLLSAPPFPPMPQPGMPQPGMPQPGMPQPGMPQPGMPQPGIPPTP
PVQPTFQPTFQPQNEPLSQKPHQQEMEVEQPCIPEVKRHVPESRKSRSRSASRSPKRRRS
RSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDREKERERRQKGLPQIKSETASVCST
TLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNY
KVNQKSIKIAWALNKGIKADYKQYWDVELGVTYVPWDKVKPEELESFCEGGMLDSDTLNP
DWKGIPKKSENEVAQNGGAEASHTDPVSPVPKPLPVPVPPIPVPAPITVPPPQVPPHQPG
PPVVGALQPPAFTPPLGIPPPGFGPGVPPPPPPFLRPGFNPMHLPPGFLPPGPPPPITPP
VSIPPPHTPPISIPNSAIAGISEDTTKDLSIGNPIPTVVSGARGNAESGDSAKMYGSAAP
PAAPTNLPTPPVTQPVSLLGTQGVAPGPVIGLQAPSSGLLGARPGMIPLQRPPGMPPPHL
QRFPMMPPRPMPPHMMHRGPPPGPGGFAMPPPHGMKGPFPPHGPFVRPGGMPGLGGPGPG
PGGPEDRDGRQQQPQQQQQQQPQPQPQPPPQQSQPQQPPPSQQPAPAQQQPQQFRNDNRQ
QFNSGRDQERFGRRSFGNRVENDRERYSNRNDDRDNSNRERREWGRRSPDRDRHRDLEER
NRRSSGHRDRDRDSRDRESRREKEENRKEKHELPDRAGSSKASEPPLSQVGNVDTVSELD
KGEAMATVVKPEASPAEATSSVEPEKDSGSAAEAPR
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgtggtgtcagaacttgctccatcgcacgcttttttcactgatggacatgaaacctccc
atctctagagccaagatgatcctgattactaaagctgctattaaagctattaagctttac
aagcatgttgttcagatagtagagaaattcatcaaaaagtgtaaaccagaatacaaggtt
ccaggattatatgtcattgattccattgtgagacagtctcgtcatcagtttggaactgat
aaagatgtttttgggccaagattctctaaaaatataactgctacattccaatatttatat
ctttgtccatctgaagataagagtaaaatagttcgtgtgctaaatctttggcaaaaaaat
ggagtattcaaaattgaaattattcagcctcttttggacatggcagcaggagccagtaat
gctatcccagtagcagaaaatgtcaccaacaatgaaggctcacctccacccccagtaaac
gcctcttctgaacttgcacaagctcccacaaactccatgcctgctgtaccacagttgccc
agctctgatgcctttgctgctgtggctcagctgtttcagacaactcaaggccagcagctg
cagcagatccttcagacttttcaacagcctccaaaaccacagtctcccgcccttgacaat
gctgtgatggctcaggttcaggctatcacagctcagttaaagacagctcctacacaacca
cctgagcaaaaagctgctttccccccacctgaacaaaaaactgcatttgacaagaagctg
cttgatagatttgattatgatgatgagcctgaagctgtggaagatgcaaagaaagaggat
gctgctgtcaccgctgcagcctctgctgctgctgctgctgctgtccctgtccctcctaca
cccactgtggccacacctgctattgctcctgctgtgccagtaccctctaccacctcgccc
cctcctccacaggtgccatttggctatcctggggatggcatgcagcagacagcctacaca
caacatcaaagtatggatcagtttccgcctcggatgatgggaatgcagcaggatacagtg
caccatcaggtttcacttcctcctaatggacagatgccaggatttgggcttctctccgca
cctccatttcctcccatgccgcagcctgggatgccgcagcctgggatgcctcaacctggg
atgcctcagcctgggatgcctcagcctgggatgccgcagcctggaattcccccaactcca
ccagtacaaccaactttccaacctacttttcagccacaaaatgaacccctttcacaaaaa
ccacatcagcaggaaatggaagtagaacagccttgtatcccggaggttaagcggcacgtg
ccggagagcagaaagtcaagatctaggtcagcatccaggtcaccaaaaagaagaagatct
agatctggctctaggtctcggagatcccgccaccggcgttctcggtcccggtccagggac
aggcgccggcactcacctcggtctcgttctcaagaaagacgggatcgagaaaaagagagg
gaacggcgacaaaaaggcctccctcagatcaagtcagaaactgccagtgtttgtagtacc
acactgtgggtgggacagctggacaaaaggactactcagcaggatgttgccagtctctta
gaagagtttggtcctattgaatcaattaatatgattcctcccagaggttgtgcctatatc
gtaatggttcacaggcaggatgcataccgtgccctccagaaactgagccggggaaactat
aaagtgaaccagaaatccataaagattgcctgggccttaaacaaaggaataaaggcagat
tataagcagtattgggatgttgaattgggtgttacttatgtcccgtgggacaaagtcaaa
cctgaggagctggagagtttttgtgaaggaggaatgttggacagtgacacacttaaccca
gattggaaaggcatccccaagaagtctgaaaatgaagttgctcaaaatggaggtgcagaa
gcctcccacacagatccagtgtcacccgtacctaagcctttgcctgtgcctgtccctcct
attcctgttcctgcgcctataacagtgccacctccacaggtcccacctcatcagccgggc
cctcctgtagttggtgctctccagccacctgctttcacacctcccttaggaatcccccct
ccaggctttgggcctggtgttcctcctcctccaccaccatttttgcgcccaggattcaac
ccgatgcatttaccaccaggttttcttcctcctggacccccacctcctataactccacca
gtatccattcctcctcctcacactccaccaataagcatcccaaactctgctatcgctggt
ataagtgaagacactacaaaagacttatctattggaaatcccattccaacagtggtgtct
ggggctagaggaaacgccgagtctggtgacagtgcgaaaatgtatggctctgctgcgcca
cctgctgcacccacgaatctgcctacccctcctgtaacccagcctgtttcacttcttggc
actcaaggagttgcaccgggtcctgtaattgggctccaggcaccatcttctggtcttctt
ggtgccagacctggcatgatcccactccagcggcccccagggatgcctccacctcacttg
cagcggtttcctatgatgccacctcgccccatgccaccgcatatgatgcacagaggtccg
cctccaggaccagggggctttgctatgcccccacctcatggaatgaaagggccctttcca
ccacatggccctttcgttaggcctggtggaatgccagggcttgggggcccaggcccaggc
ccgggaggaccagaagatagagatggaaggcagcaacagccacagcagcagcagcagcag
cagcctcagccacagccacagccaccaccacaacagtcacagccacagcagccaccaccg
tcacagcagccagcaccagctcagcaacagccacagcagtttagaaatgataacaggcag
cagttcaattcaggtagagaccaagaaaggtttggaagaagatcttttggaaatagggtg
gaaaatgaccgggaacgttatagcaaccgtaatgatgatagagataatagtaaccgtgaa
aggagagagtggggaaggaggagccctgaccgggacagacacagagacttggaagagagg
aataggcgctctagtgggcatcgggaccgagacagggattctagagacagagagtctcgt
agagaaaaggaagagaatcgaaaagagaagcacgagctcccagacagggcaggtagtagc
aaagccagtgaacctccccttagccaagtgggaaacgtagacactgtttcagaacttgat
aagggggaggccatggccacagtggtaaaacctgaagcgtcacctgctgaggctacctca
tccgttgaacccgagaaggattctggctcagcagcagaggctcctcgctag
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