Arvicola amphibius (Eurasian water vole): 119824986
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Entry
119824986 CDS
T08327
Symbol
Xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119824986 (Xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamp03019
]
119824986 (Xab2)
03041 Spliceosome [BR:
aamp03041
]
119824986 (Xab2)
Messenger RNA biogenesis [BR:
aamp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
119824986 (Xab2)
Spliceosome [BR:
aamp03041
]
Complex B
Other components
Prp19-related factors
119824986 (Xab2)
Complex C
119824986 (Xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
TPR_14
HAT_PRP39_N
TPR_12
TPR_2
TPR_8
Suf
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
TPR_1
TPR_21
TPR_16
Motif
Other DBs
NCBI-GeneID:
119824986
NCBI-ProteinID:
XP_038201505
LinkDB
All DBs
Position
10:complement(111427219..111438133)
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AA seq
852 aa
AA seq
DB search
MVVMARPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKL
LPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQ
GRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEEY
IEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAI
IRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAVRTVMTVRDFTQVFDSYAQFE
ESMIAAKMETSSELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKR
VALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATK
VNFKQVDDLASVWCQCGELELRHENYDEALKLLRKATALPARRAEYFDGSEPVQNRVYKS
LKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYER
GISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLE
EEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEH
AREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIREM
LRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLAAEA
ERDQPPRAQSKIFFVRSDASREELAELAQQANPEEIQLGEEEDEDEMDLEPNEVRLEQQS
VPAAVFGSLKED
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgtcccgagcggccggatctggtttttgaagaagaggaccttccc
tatgaggaagaaattatgaggaatcagttctccgtcaaatgctggctccgctacatcgag
ttcaaacagggggcccccaaaccccggctcaatcagttgtacgagcgggcgctcaaactg
cttccctgcagctacaaactctggtaccgctatctgaaggcacgccgggcacaggtgaag
catcgctgcgtgactgatcctgcctatgaagatgtcaacaactgccatgagagggccttt
gtgttcatgcacaagatgccacgtctgtggctagactactgccagttcctcatggaccag
ggccgagtaacacacacccgccgcacctttgatcgtgccctccgggccctacccatcaca
cagcactctcgcatctggcccctgtacctccgcttcctacgctcccacccactgcctgag
accgctgtgagaggctaccgtcgcttcctcaagctcagtcctgagagtgctgaggaatac
attgagtacctgaaatccagtgaccggctggatgaggctgcacaacgcctggccaccgtg
gtgaacgacgagcgctttgtgtccaaggcgggcaagtccaactaccagctgtggcacgag
ctctgcgaccttatctcccagaatccggacaaggtacagtccctcaatgtcgatgccata
atccgtggtggactcacccgcttcaccgaccagctgggcaagctatggtgctccctggct
gactactacatccgcagtggccacttcgagaaggctcgggacgtgtacgaggaggctgtc
cgcactgtgatgactgtgcgggacttcacccaggtgttcgacagctatgcccagttcgag
gagagcatgattgcagcaaagatggaaacttcctctgaactggggcgtgaggaagaggat
gacgtggacctggagttgcgcctggcccgcttcgagcagcttattagccggcggccccta
ctcctcaacagtgttctgctgcgccagaacccacaccatgtccatgagtggcacaagcgt
gtggccctgcatcagggccgcccccgtgagattatcaacacatacacggaggctgtgcag
acagtggaccctttcaaggccacaggcaagccccacacgctgtgggttgcatttgccaag
ttttatgaagacaacggacagctggatgatgcccgtgtcatcctagagaaggccaccaag
gtaaactttaagcaagtggatgacttggcaagtgtgtggtgccagtgtggggagctggag
ctccggcatgagaattacgatgaggccttgaagctgctgcggaaagccacagcattgcct
gcccgcagggctgagtactttgatggttcagagccagtgcagaaccgtgtatacaagtcg
ctgaaggtgtggtccatgcttgctgacttggaggaaagtctaggcaccttccagtcaacc
aaagccgtatatgaccgaatcctggacctgcgcatagccacaccgcagatcgtcatcaac
tatgccatgttcctggaggagcacaagtactttgaggagagcttcaaggcatatgagcgt
ggcatatcactgttcaaatggcccaacgtgtcagacatctggagcacctacctgaccaaa
ttcattgcccgctacgggggccgcaagctggaacgcgcacgggatctctttgagcaggca
ctagatggctgcccgcccaaatatgccaagacgctgtacctgctctatgcacagctggag
gaggagtggggccttgcccgtcatgccatggctgtgtatgatcgcgctaccagagcagtg
gagccagcccaacagtatgatatgttcaacatctacatcaagcgggctgccgagatctat
ggtgtcacccacactcgtggcatctaccagaaggccattgaggtgctgtctgatgagcat
gcccgtgagatgtgcctacggtttgcagacatggagtgcaagcttggtgaaattgaccgc
gcccgggccatctacagtttctgctcccagatctgtgatcctaggacaactggggcattc
tggcaaacatggaaggactttgaggttcggcacggcaatgaggacaccatcagggagatg
ctgaggatacgtcggagtgtgcaggccacatacaatactcaggtcaacttcatggcctca
cagatgctcaaggtgtccggcagtgccacaggcaccgtgtctgacctggctcctgggcag
agcggcatggatgacatgaagttgctagaacagcgggcagagcagctagcagctgaggca
gagcgggaccagccccctagggcccagagcaagatcttctttgtaaggagtgatgcatcc
agggaggagctggcagagctggctcagcaggccaatcccgaggagatccagctgggcgag
gaagaggacgaggatgagatggacctggaacccaatgaagtccgactggaacagcagagc
gtgccagctgctgtatttgggagcctgaaggaagactga
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