Arvicola amphibius (Eurasian water vole): 119825236
Help
Entry
119825236 CDS
T08327
Symbol
Robo1
Name
(RefSeq) roundabout homolog 1 isoform X1
KO
K06753
roundabout, axon guidance receptor 1
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp04360
Axon guidance
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09150 Organismal Systems
09158 Development and regeneration
04360 Axon guidance
119825236 (Robo1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
aamp04515
]
119825236 (Robo1)
Cell adhesion molecules [BR:
aamp04515
]
Immunoglobulin superfamily
ROBO family
119825236 (Robo1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
Ig_2
ig
fn3
V-set
C2-set_2
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
Ig_J_second
Big_4
Motif
Other DBs
NCBI-GeneID:
119825236
NCBI-ProteinID:
XP_038201911
LinkDB
All DBs
Position
10:complement(23673240..24047737)
Genome browser
AA seq
1618 aa
AA seq
DB search
MIAEPAHFYLFGLICLCSGSRLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTI
EWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYICVARNYLGEAVSH
NASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERIT
IRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKRPSNLAVTVDDSA
EFKCEARGDPVPTVRWRKDDGELPKSRYEIRDDHTLKIRKVMAGDMGSYTCVAENMVGKA
EASATLTVQVGSEPPHFVVKPRDQVVALGRTVTFQCEATGNPQPAIFWRREGSQNLLFSY
QPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSIITKAYLEVTDVIADRPPPV
IRQGPVNQTVAVDGTLVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLETGMLQIRYAK
LGDTGRYTCTASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNLIPSAPSKPEVTDVSKNT
VTLSWQPNLNSGATPTSYIIEAFSHASGSSWQTVAENVKTETFAIKGLKPNAIYLFLVRA
ANAYGISDPSQISDPVKTQDVPPTSQGVDHKQVQRELGNVVLHLHNPTILSSSSVEVHWT
VDQQSQYIQGYKILYRPSGSNHGESEWLVFEVRTPTKNSVVIPDLRKGVNYEIKARPFFN
EFQGADSEIKFAKTLEEAPSAPPRSVTVSKNDGNGTAILVTWQPPPEDTQNGMVQEYKVW
CLGNETRYHINKTVDGSTFSVVIPSLVPGIRYSVEVAASTGAGPGVKSEPQFIQLDSHGN
PVSPEDQVSLAQQISDVVKQPAFIAGIGAACWIILMVFSIWLYRHRKKRNGLTSTYAGIR
KVPSFTFTPTVTYQRGGEAVSSGGRPGLLNISEPATQPWLADTWPNTGNNHNDCSINCCT
AGNGNSDSNLTTYSRPADCIANYNNQLDNKQTNLVLPESTVYGDVDLSNKINEMKTFNSP
NLKDGRFVNPSGQPTPYATTQLIQANLSNNMNNGGGDSSEKHWKPPGQQKQEVAPIQYNI
MEQNKLNKGEDYRANDTIPPTIPYNQSYDQNTGGSYNSSDRGSSTSGSQGHKKGARTPKA
PKQGGMNWADLLPPPPAHPPPHSNSEEYSLSVDESYDQEMPCPVPPARMYLQQDELEEEE
DERGPTPPVRGAASSPAAVSYSHQSTATLTPSPQEELQPMLQDCPEDIGHMAHQPDRRRQ
PVSPPPPPRPISPPHTYGYISGPLVSDMDTDAPEEEEDEADMEVAKMQTRRLLLRGLEQT
PASSVGDLESSVTGSMINGWGSASEEDNISSGRSSVSSSDGSFFTDADFAQAVAAAAEYA
GLKVARRQMQDAAGRRHFHGSQCPRPTSPVSTDSNMSAAVIQKARPAKKQKHQPGHLRRE
AYTDDLPPPPVPPPAIKSPTVQSKAQLEVRPVMVPKLASIEARTDRSSDRKGGGSYKGRE
ALDGRQVPDLRTNPGDPREAQEQQNDGKGRGNKAAKRDLPPAKSHLVQEDILPYCRPTFP
TSNNPRDPSSSSSMSSRGSGSRQREQANVGRRNMAEMQVLGGYERGDDNNEELEETES
NT seq
4857 nt
NT seq
+upstream
nt +downstream
nt
atgatcgcggagcctgctcacttttacctctttggattaatatgtctctgttcaggctcc
cgtcttcgtcaggaagatttcccacctcgcattgttgaacacccttcagatctaattgtc
tcaaaaggagaacctgccactttgaactgtaaagccgaaggccgccctaccccgactatc
gaatggtacaaaggcggggaaagagtggagaccgacaaagatgaccctcgctcgcaccga
atgttgctgccaagtggatctttatttttcttacgtatagtacatggacggaagagcagg
cctgacgaaggggtctacatctgtgtagcaaggaattacctgggagaggctgtgagccac
aacgcatcgctggaggtagctatactacgggatgacttcagacaaaacccttcagatgtc
atggtggctgtaggtgagcctgcagtaatggagtgccagcctcctcggggccatccagaa
cccaccatctcctggaaaaaagatggctcacccctggatgataaagatgaaagaatcact
atacgaggaggaaagctcatgatcacttatacccgcaagagcgatgctggcaagtacgtc
tgtgttggtaccaacatggtgggagaacgcgaaagtgaagtggcagagctgaccgtttta
gagagaccgtcgtttgtgaagagacccagtaatttggcagtaactgtggatgacagtgca
gaatttaaatgtgaggcccgaggagaccccgtgcctacggttcgatggaggaaagatgat
ggagagctgcccaaatccagatatgaaatccgagatgatcatactttgaaaattcggaag
gtgatggctggtgacatgggatcatacacttgtgttgcagaaaatatggttgggaaagct
gaagcatcagccactctgacagtgcaagttgggtctgagcctccccattttgtcgtgaag
cctcgcgaccaggttgttgccttgggacgaactgtgacttttcagtgtgaagcaactgga
aatccccaacctgctatcttttggaggcgagaggggagtcagaatctgcttttctcgtac
cagccaccccagtcatccagccggttttcagtgtcccagactggagacctcacgattact
aacgtgcagcggtctgatgtgggttattatatctgtcagactttaaatgttgctggaagc
atcatcacaaaggcttatttggaagttactgatgtgattgcagaccggcctcccccagtc
attcgacaaggtcctgtgaatcagactgtagcagtggatggtactttagtcctcagctgt
gtggccacaggcagtccagtgcccacaattctgtggaggaaggatggcgtccttgtttca
acccaagattctcggatcaaacagctggagaccggcatgctacagatccgatatgcaaag
ctgggtgacactggccggtatacctgcactgcatcaacccccagtggagaggcaacgtgg
agtgcttacattgaagtccaggaatttggagttccagttcaaccgccaagacccactgac
cccaacttaatccccagtgccccctcaaagcctgaagttacagatgtcagcaaaaacaca
gtgactttatcctggcagcccaacttgaactcaggagcaaccccaacgtcttatattata
gaagccttcagccatgcatccggtagcagctggcagaccgtagcagaaaatgtgaaaaca
gaaacatttgccatcaaaggactcaaacctaatgcaatataccttttcctggtgagggca
gcgaatgcttatgggattagtgatccaagccaaatatcagacccagtgaaaacacaagat
gtcccaccaactagtcaaggcgtggaccacaagcaggtccagagagagctgggaaatgtg
gtcctgcacctccacaaccctaccatcctttcttcctcgtcggtggaagtacactggaca
gttgaccaacaatctcagtatattcaaggatataaaattctctaccggccatctggatcc
aaccatggtgaatctgaatggttggtttttgaagtgaggaccccaaccaaaaacagtgtg
gtgatccctgatctcagaaaaggcgtcaactatgagattaaggctcgcccattttttaat
gagtttcaaggagctgacagtgaaatcaaattcgccaaaaccttagaagaagcacctagt
gcccctccccgaagtgtaactgtgtcaaagaatgatggaaatgggactgcaattcttgtc
acttggcaaccccctcctgaagacactcaaaatggaatggttcaagaatataaggtttgg
tgtctaggtaacgaaactaggtatcacataaacaagacagtcgatgggtctaccttctct
gtggtcatcccctctctggttcctgggatccggtacagtgtggaagtggcagccagcact
ggggcaggtcctggggtgaagagtgagcctcagttcatccaattagattctcatggaaat
cccgtgtctcccgaggaccaagtgagccttgctcagcagatctcagatgtggtgaagcag
ccagctttcattgctggcattggggcagcctgctggatcatcctcatggtctttagcatc
tggctgtacaggcaccgcaagaagagaaacggtctcaccagcacgtacgcgggcatcagg
aaagtcccgtcttttaccttcacaccaacagtaacttatcaaagaggaggcgaagccgtc
agcagtggagggaggccaggacttctcaacattagtgagcctgccacacagccttggctg
gcagacacatggcccaacaccggcaacaaccacaatgactgctccatcaactgctgcaca
gcaggcaatgggaacagcgacagcaacttgacaacctacagtcgcccagctgattgtata
gcaaattataacaaccaactggataacaaacaaacaaatctggtgctccctgagtcaact
gtttatggtgatgtggaccttagtaacaaaatcaatgagatgaaaaccttcaatagccca
aatctgaaggacgggcgttttgtcaatccatcagggcagcctactccctatgccactacg
cagctcatccaggcaaacctcagcaacaacatgaacaatggcggcggggactccagcgag
aaacactggaagcctccgggtcagcagaaacaggaagtggcgccaattcagtataacatc
atggagcaaaacaagctgaacaaaggtgaagattatcgggcaaatgacacaatcccccca
accattccgtacaaccagtcctatgaccagaatacaggaggatcttacaacagctcagat
cggggcagtagtacgtctgggagtcagggacacaagaaaggggcacggacaccaaaggca
cccaagcagggtggaatgaactgggcagacttgcttccccctcctccggcgcatcctccc
ccacatagcaacagtgaagaatacagcctgtccgtagatgaaagctatgaccaagaaatg
ccatgtcctgtgccgcctgcaaggatgtatttgcagcaggatgaattagaagaggaggaa
gatgaaagaggccctacacctcctgtgcggggggctgcatcttctccagcggctgtgtcc
tatagccaccagtccacagctactctcaccccttcaccccaggaggaactccagcccatg
ttacaggattgtccagaggacattggccacatggcccaccagccagacaggagacggcag
cccgtgagtcctcctccaccacctcggccaatttccccacctcatacttacggctacatt
tcgggacccctcgtctcagatatggatacggatgccccagaagaggaggaagacgaagct
gacatggaagttgccaaaatgcaaactagaaggcttttgttacgtgggcttgagcagacc
ccagcatccagtgttggggaccttgagagctctgtcactgggtccatgatcaatggctgg
ggctcagcctctgaagaggacaacatttccagcgggcgctccagtgtcagttcatctgat
ggctcctttttcactgacgctgactttgcccaggccgtcgctgcagcggcagagtatgct
ggcctgaaagtcgctcgacgccaaatgcaggatgctgctggccgccgccatttccatggc
tctcagtgccctaggcccacaagccccgtgtctacagacagcaacatgagcgctgctgtc
atccagaaagccagacccgccaagaaacagaaacaccagccaggacatctgcgcagagaa
gcctacacagatgatcttccaccccctccagtgccaccacctgctataaaatcgcccact
gtccagtccaaggcacagcttgaggttcgacctgtaatggtgccaaaactcgcttctata
gaagcaagaacagacagatcatcagacagaaaaggaggagggagttacaaggggagagaa
gcactggatggacgacaagtccctgacctgcgaacaaatccaggtgaccccagagaagca
caggaacagcaaaatgacgggaaaggacgggggaacaaggctgcgaagcgagaccttcct
ccagcaaagtcgcacctcgtccaagaggatattctaccgtactgtagaccgactttccct
acatcaaacaaccccagagatcccagttcctcaagctcgatgtcatcacgaggatcagga
agccgacaaagagagcaggcgaatgtaggtcggaggaacatggcagaaatgcaagtactt
gggggatatgaaagaggagatgataataatgaagaattagaggaaactgaaagctga
DBGET
integrated database retrieval system
