Arvicola amphibius (Eurasian water vole): 119826592
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Entry
119826592 CDS
T08327
Symbol
Pdcd11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
aamp03009
]
119826592 (Pdcd11)
Ribosome biogenesis [BR:
aamp03009
]
Eukaryotic type
90S particles
Other 90S particles
119826592 (Pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
OB_RRP5
HAT_PRP39_C
Suf
OB_RRP5_4th
TPR_14
HAT_Syf1_CNRKL1_C
TPR_19
TPR_15
TPR_CcmH_CycH
DUF7017
DUF2110
ARM_TT21_5th
ARM_TT21
UTP6_C
NRDE-2
Motif
Other DBs
NCBI-GeneID:
119826592
NCBI-ProteinID:
XP_038203927
LinkDB
All DBs
Position
1:186854046..186896942
Genome browser
AA seq
1868 aa
AA seq
DB search
MANLEENFPRGGTRKSHKSEKPSQQAVEQDNLFDISTEEESTKRKKSQKGPMKTKKLKTE
KRDIKKSVREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYT
QKLNEQVAQEEPLEDLLRLPDLFSPGMLVRCVVSSLDITDRGKKTVKLSVNPKHVNKVLS
AEALRPGMLLTGTVSSLEDHGYLVDIGVVGTRAFLSLQKNKGAKLKIGQYLTCLVEEVKS
NGGIVSLSVEHSEISSAFATEEQSWNLNNLLPGLVVKAQVQKVTQFGLQLSFLTFFTGLV
DFMHLEPKKIGAYSSAQTVKACILCIHPRTRVVRLSLRPIFLQPGRPLTRISYQKIGAVL
DNVPVQGFFEKAGATFKLKDGTLAYARLSHLSDSKKLFSAETFKPGSTHKCRIIDYSQMD
ELVLLSLRKSIITAHFLRYHDIKSGTVIKGTVLAIKAFGMLVKVGEQMRGLVPSMHLADI
MMKNPEKKYHLGDEVKCRVLHCDPEAKKLLMTLKKTLVTSKLPAIMCYEDAKPGLQTHGV
IIRVKSYGCIVKFYNNVQGLVPKHELSEQHIPDPERVFYTGQVVKVAVLNCEPSKERMLL
SFKLLSDSEPKNESVENSQKKGRAVNTGQLVDVKVLEKTKDGLEVAILPHNIPAFLPTPH
LSDHVANGPLLHHWLQAGDTLHRVLCLSQGEKHILLCRKPALVSTVEGGQDPKSLSEIQP
GMLLLGFVKSIKDYGVFIQFPSGLNGLAPKAIMSDKFVTTPSDHFVVGQTVVAKVTNVDE
EKQRMLLSLRLSDCSLGNSANTSFILLCQCLEELQGVRSLMSNQDSVLIQTLAEMTPGMV
LDVMVQKVLEDGSVVFSGGPVPDLILKASKYHRAGQEVESGQKRKVVVLHVDMLKLEVHV
SLHQDLVNRKARKLRKSSRHQGIVQHLEESFAVASLMETGQLVAFSLTSHLNDTFHFDSE
KLHVGQGVCLTLKTTEPGVMGLILAVEGPASKRTQNPAQRDSKTVDGKEEEEEDTDLTVR
NKKKHGLAIGDKVTGTIKSVKATHVVVTLEDGIVGCIHASRILDDVPVGTSPTTTLKVGE
TVTARVIGGRDVKTSKFLPISHPRFVLTILELSIRPSDLKKDDYNALNTQSVSPTEKTLQ
YQAGQTVTCFFKKYNMMKKWLEVDVAPDIRGRIPLLLTSLSFKVLKHPDKKFQIGQALKA
TVVSSDIPKAFLCLSLIGPYKLEQGEIAMGRVLSVAPNKGLTVSFPFGKIGKVSLFHVSD
SYSEAPLEDFFPQKIVRCYVLSTEHSVLALSLRSSRANREAKSKIEDPEINSIQDVKEGQ
LLRGYVKTVLSDGVLVGLGPSVVGLAQYSHVSQCSPPRKELYDHYLPKGKLVTAKILRVN
PEKSQVKLSLLPSDTGKPDVFSASPEPLLLNQKEKKEGAEERALKGEEKEQKSQKRKEKN
QKGQEETEMFSQEKKEPQKSQRSRQGKRERQEPASEQERVSKRPKQSGAPEEDDSGVEVY
YREGEDEMEQLGVLPRGKQAEPAEVPRLQLSSGFLWDVGLDSLTPALPLRGESSDSEEDE
KPQQAKKKKGKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPDSSILWL
QYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFER
AVQYNEPLKVFLHLADIYTKSEKFKEAGELYSRMLKRFRQEKAVWIKYGAFVLRRSQPGA
SHRVLQRALECLPTKEHVDVITKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYID
MTIKHGSQKEVRDIFERVIHLSLAPKKMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVE
AKSSALED
NT seq
5607 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacctggaagaaaacttcccccgagggggtacaagaaaaagccacaaatcagag
aaaccttcccagcaggcagttgaacaggacaacttatttgatatctccacagaagaagaa
tccactaaaaggaagaagagccagaaagggcccatgaaaacaaaaaaactgaaaactgaa
aagagagacatcaagaaatctgtgagagaaaaatttgaaatcctcagtgttgagtccctg
tgtgagggaatgcggattttgggttgtgtgaaagaggtgaatgaactggaactggtgatc
agccttcccaatggcctccaagggtttgtgcaagtgactgaaatctgtgatgcctacact
cagaagctgaacgagcaggtggcccaagaagagcctctggaggacctactccgcttgcct
gaccttttctcacctggaatgttggtgagatgtgtggtgagcagcctggacatcacagat
aggggcaagaagactgtcaagctctctgtaaaccccaaacatgtcaacaaagtgctgagt
gctgaggccctgaggccgggcatgctgctgacaggcacagtttcaagcctggaagaccat
ggctacctagtggacattggtgttgttgggaccagagcttttctgtcactacagaagaac
aaaggtgctaagctcaaaattggccagtacctgacctgtctggttgaagaggtgaaaagc
aacggaggaattgtgagtctctctgtagagcactcagagatttcttctgcctttgcaact
gaggagcaaagctggaacctgaataacttgctaccaggactcgtggtcaaagcccaggtg
cagaaggtaactcagtttggactccagctcagcttccttacattcttcacaggcctggtc
gacttcatgcatctggagcccaagaaaattggagcctattcttcagctcaaacagtaaaa
gcctgcatcctctgcatccatcctcgaactagagttgtacgactgagcctgcgtcccatc
ttcctgcagcctgggcggccactcacccggatctcttaccagaagataggggctgtgctg
gataatgttcctgttcagggattttttgagaaggctggggccaccttcaagctgaaggat
gggaccctggcctatgcccggctcagccatctctctgattctaaaaaattattcagtgct
gagaccttcaaaccagggagcactcacaagtgtaggattattgactacagtcaaatggat
gagctggtcctgctgtctctgcggaaatcaattattacagctcattttcttagatatcat
gacatcaaatcagggacagtgataaagggtacagtgctggccataaaggcatttggaatg
ctggtgaaagtgggtgagcaaatgagaggcctggtaccttccatgcacctggctgacatc
atgatgaagaatccagagaagaaataccacctgggggacgaggtcaagtgccgggtttta
cactgtgaccctgaagccaagaagctgttaatgaccctgaagaaaactcttgtcacatcc
aaactacctgccattatgtgctatgaggatgccaagcctggcctgcaaacgcatggtgtt
atcataagagtcaagagctatggctgcatcgtaaagttctacaataacgtgcaggggctg
gtgcccaagcatgagctcagtgagcagcatattcctgaccctgagagggtcttttacact
ggccaggtggtgaaggtggcagtgttgaactgtgaaccttccaaggagaggatgctcctg
tccttcaaactgttgagtgattcagagccaaagaacgagagtgtcgaaaacagtcagaag
aaaggaagagctgttaacactgggcagttggtggatgtgaaggttttggagaagaccaaa
gatgggctggaggtggccatccttccccacaacatccctgctttccttcccacgccgcat
ttgtcagatcatgttgccaatggccctctgttgcatcactggctccaggcaggtgacacc
cttcatcgagttctgtgtctgagccagggtgagaaacatattcttctttgcaggaagcca
gctttggtctccacagtagaaggtggccaggaccccaagagcctctcagaaattcagcct
ggaatgctgctccttggctttgtgaagagcatcaaggactacggtgtattcatccagttc
ccttcaggtcttaatggactggcccccaaagctatcatgagtgacaagtttgtaaccact
ccaagtgaccacttcgtggtgggtcagacagtcgttgctaaggtgaccaatgtggatgag
gaaaagcaaaggatgctcttgtctctgcgactatcagactgcagcctgggaaattcagcc
aacactagcttcatcctcctgtgccagtgcctggaagagctgcagggtgtccgcagcctc
atgagtaaccaagactctgtgttgattcaaacactggctgagatgaccccagggatggtc
cttgatgtcatggtacaaaaggtgttggaagatggttcagtggtgttcagtgggggtccc
gtgcctgacctgatcttgaaagccagcaaataccatcgggcagggcaagaggtggagtct
gggcagaagaggaaggttgtagtcctacatgtggacatgttgaagttggaggtccatgtt
tcccttcaccaggacttggtgaataggaaagctagaaagctgaggaagagcagtagacat
caaggcatcgtgcagcatctggaggagtcctttgctgtggcttccttgatggagactggc
caacttgtagctttctccctgacctctcacctcaacgacactttccactttgactctgag
aagctacatgtgggacagggtgtctgcctcactctcaagaccacagaaccaggagtgatg
ggtctgattttggctgtggaagggccagcttctaagaggacccagaatccagctcagagg
gattccaagacggttgatggcaaagaggaggaagaggaggacacagacttgactgtgagg
aataaaaagaagcatggcctggctattggggacaaagtcactgggaccattaagtctgtg
aaggccacacatgtcgttgtgactctagaagatggcatcgttggctgtatccacgcctcc
cgcattctagacgacgttccagtgggcacctctcctacaaccacacttaaagttggggag
acagtcaccgcacgagtgatcggtggacgagacgtgaagacatccaagtttctcccaata
agtcaccccagatttgtcctgaccatcctggagctgagcattcggccaagtgatttgaag
aaggatgactacaatgctcttaatactcagtctgtaagccccacggagaagactctgcaa
taccaggccgggcagactgtgacttgcttcttcaagaagtacaacatgatgaagaagtgg
ctggaggtagatgttgcgccagacatccgagggagaattcctttgttgctcacctccctg
agcttcaaggttctgaaacacccagacaagaagttccagattgggcaggccctgaaggcc
actgtagtcagctcagacatccccaaggctttcttgtgtctgtcactcataggtccttac
aaacttgaacaaggggaaatagccatgggccgagtgttaagtgtggcacccaacaaagga
ctgaccgtctccttccccttcgggaagatagggaaagtcagtttatttcatgtgagtgac
tcctactccgaggcacccctggaggacttctttccccagaagatcgtcagatgttatgtt
ctgtccacggaacacagtgtgttggctttgtcattacgatcgtccagggcaaacagagaa
gcaaaaagtaaaattgaagatccagagattaactccatccaggatgtcaaggaagggcag
cttctgaggggctatgtgaaaactgtcctgtcagatggtgtgctcgtaggccttgggcct
tcagttgtaggtttggcccagtactcacatgtgtctcagtgtagcccacccaggaaagag
ctttatgaccattacctccccaagggaaagctggtcactgccaagatcctacgcgtgaac
cccgagaagagccaggtaaagctgtcactccttcccagcgacactgggaagccggacgtg
ttttctgcctccccagaaccactacttctgaaccaaaaggagaagaaagaaggggctgag
gagagggccctaaaaggagaagagaaagagcaaaagagccaaaaaaggaaagagaagaac
cagaaggggcaggaggagacggagatgttcagccaggagaagaaagagccccagaagtca
cagaggagcaggcagggaaagcgggagcgccaggagcctgcgagtgaacaggaaagagtg
agcaagagaccgaagcagtctggggcaccagaagaggacgacagtggtgtggaagtctat
tatcgggagggagaagatgagatggagcagctgggggtgttgcccaggggaaagcaggca
gagcccgcagaggtgccccggctgcagctctcttcaggcttcctttgggacgtggggctc
gactctctgactccagccttgccactccgaggagagagctcagacagcgaggaggatgag
aagccacagcaagccaagaagaagaagggcaagaaggaaagggagctggagaaacagaag
gcggagaaggagctgtcgcgcattgaggaggctctcatggaccctgggcgacagcctgag
tcggcggatgattttgaccggctggtgttgagctcccccgacagctccatcctgtggctg
cagtacatggctttccacctgcaggccactgagatcgaaaaggcccgagctgttgctgag
agggccctgaagaccatctccttcagagaggagcaggaaaagctgaatgtgtgggtggca
ctgctgaacctcgaaaacatgtacggctcccaggagtccttgactaaggtcttcgagcgg
gctgtgcagtacaacgagcctctcaaggttttcctgcatctggctgacatctacaccaag
tcagaaaagttcaaggaagcaggtgagctgtacagccggatgctgaaacgcttccggcag
gagaaggctgtctggatcaaatacggcgcttttgttttgcggaggagtcagcctggggcc
agtcaccgtgtgctgcagcgagccctggagtgcctgcccaccaaggagcatgtggacgtg
attaccaagtttgcccagctagagttccagctgggggatgcagaacgggctaaagccatc
tttgaaaacacactgagcacctacccaaaacgcacagatgtctggtcagtctacattgac
atgaccatcaagcatggcagccagaaggaagtcagggacatctttgaacgcgtcatccat
ctgagcctggcccctaagaagatgaagttcttctttaagcgttacctggactacgagaag
cagcacggcaccgagaaggacgtgcaggctgtcaaggcgaaggccctggagtacgtggag
gccaagagctcagcattggaggactag
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