Arvicola amphibius (Eurasian water vole): 119826718
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Entry
119826718 CDS
T08327
Symbol
Shoc1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
aamp03036
]
119826718 (Shoc1)
Chromosome and associated proteins [BR:
aamp03036
]
Eukaryotic type
Meiosis-specific proteins
Others
119826718 (Shoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
119826718
NCBI-ProteinID:
XP_038204121
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All DBs
Position
11:complement(109309233..109374377)
Genome browser
AA seq
1472 aa
AA seq
DB search
MFSAFKYYAIDYLHENTIKERICRDALLLPIPPCLYQDKNFIDDKYRSPWTRAASFPEVT
DNSVLEQWTTRFCVEDFPEKKTVTGMIINGTFEEIVPSSNPNSPTRIDDVHSSLSKDHRE
DFTPIKCSPHYPGVKAEHQGLLIDEELIFINKAVDDYLPTVDTILSRLKLYRVKDPLLDF
KEQLCGKDNFTECFSVQERLEPSVRDFHMAEETFCKKKLPSVFPSEFEFLISTIPKQEIP
TLLLSELKESLNSIPEIMDHEDENKKPFKRDLSTKYESDAEDVDCNSTEILPTESPSEPE
GSEAGELEMPLSSLTLPRQHSPVSSPCAEFQTFPFSAVCKINLLSAGESANKYCMLWHLG
SCRNSWVSFMLTVPRFEEPSSQYSLADMRNIFSIKGDSLVINPAKAKGWRQARRNPIMAE
TLEHLKAYLCHSGLSSKEAKLEIFLPTKVLQMEPWLEQQSCPLPVMPVSEKSASVYRLHP
QKRPSPENKVLHQMQSEECVSAKKTKKEENPKSDQELAAGTVQKTDNSCAGLADSAPSVE
SASSSQIKASYYKKQHDLDLLSEFITLRSKYKPFTSDAEVPDHDQNSEFQDKEKCSVTLQ
EESPIVSNNRTAEERSRERADDVIEIQASDTQCQAYCLLEAAATPVLKKLVCLCTYPAAN
WKFATVVFDQTRFFLKEQEKLVNDAVHQGEHADREITFRHAALLHLLVTMRDVLLTCSLD
TALGYLSNAKDIYKSMLDSCLDNIWRQLKILQFIKEKRPKTNYKIQELQCQILSRLQSQQ
QIKVLIIIRMDSNGEKHLLFKTLKKIEGLTVTVLRSNERKKFLETTGVVKGTSSCVVVHN
HHIGADFPWSSFSLVLEYNHVEHSCWARHCQQLNIPFLAFRVVLPDSALKRVTLLDRFGG
FLLEIQVPYVFFASEGLLNIPEILRLLESGYNITLVERSYCESLKLFGSTERYVVLTVDE
HTAVVVQDLEELHYEKASDNIIMRLMALSFQYSCCWIILYPKETLDSEYHLTPKTLHHLA
QIYAALVSSGLKSEELDVKLIIAPGVEETALTIRQIADHNLMTSKRDPHEWLDKSWIEVS
PSKEEMHLLDFPCINPLVAQLMLHRTPSLHWLLRASPSELQELLPEVPVKVLKHFCSITS
LFKISSSSMTESPRISSLQEDMNQTHPFISQSSAPVIQEHDEYYSYEDPEETVQEGTSAS
LMELRESICRPTSATSHGQASSWNDFLSGPNTVRNNPFPRHKEPQKASWRSFPSQGDSES
GVFSLGLTHINCEPEMLPTDTQRRVTHSFVNYPRAKGSRSMQVSSPIFLPEGSPSHPCWD
FKKNTDQKQMYSSRSSCRAEQTTYNKWCPQEDDFTSDWPECLSAELEDFTYRHSNAGTDQ
TFWRERPSVPSWDSFYASDSNVNQRGFNGLNFYQRAGNYLGQRKLPVSSSNWEDSETPTG
LMYSQVPQPKKRRLMYEKVPGRMDGQTRLRFL
NT seq
4419 nt
NT seq
+upstream
nt +downstream
nt
atgttttcggcattcaaatattatgcaatagactatttacatgagaacacaattaaagaa
aggatttgcagagatgctttattgcttccgattcctccgtgtttatatcaagataaaaac
tttattgatgataaatataggagtccatggacaagagctgcttcatttccggaggtgaca
gataattcagtcttggaacagtggacaacaaggttctgtgtggaggattttcctgagaaa
aagacggttacaggaatgataattaatggtacgtttgaggaaattgttcccagttccaat
ccaaactctccaaccagaatagacgatgtccactcatccctcagtaaggaccacagagaa
gactttacccctatcaagtgctccccacactacccaggagtgaaagctgagcaccaagga
ttacttattgatgaggaattgatatttataaataaggcagtggacgattatctaccaact
gtggatactatcttgagcagactaaagctctatcgggttaaggatccgcttttagatttc
aaagaacagctctgcggaaaggataatttcacggagtgtttctctgttcaagaacgattg
gaaccttctgtgagagatttccatatggctgaggagaccttttgtaagaagaaactacca
tcagtttttccttctgagtttgaattcttaatatctacaatccccaaacaagaaattccc
actctattgctatcagaactgaaggaatcattaaactcaatacctgaaataatggatcat
gaagatgaaaataaaaaacctttcaaaagagatctttctaccaaatatgagtctgatgct
gaggatgtggactgcaactccacagagatcttacctaccgaaagcccatctgaaccagag
ggcagcgaagcaggagaattggaaatgccactaagcagtctaactttaccaaggcaacat
tctccagtgagttcaccatgtgcagaatttcagacatttccattttctgctgtgtgtaaa
attaatttgcttagtgctggagaatcggctaataaatactgtatgctgtggcacttggga
agctgcagaaactcttgggtctcattcatgcttacagttccaagatttgaagagcccagc
agtcaatattctcttgcagatatgaggaatatcttttctatcaaaggagacagccttgtg
attaaccctgcaaaagcaaagggttggagacaagcaagacgaaatccaataatggccgaa
actttggagcatctgaaggcatatttgtgtcacagtggtctgtcttctaaggaggctaag
ctggagatctttctgcccacaaaagtgcttcagatggagccttggctggaacagcagagt
tgccccttgcccgtcatgcctgtgagtgagaagtctgccagtgtctacagattacatcct
cagaagagaccatctcctgagaacaaagtgctgcatcagatgcagtctgaggaatgcgtc
tctgctaaaaaaacaaaaaaggaagaaaatcccaagagtgaccaagagctagcggctgga
acagtgcagaagacagacaacagttgtgctggacttgctgactccgcgccctctgttgag
tcagcttcctcttcacagatcaaggcatcgtactataaaaagcagcatgacttggatctt
ttgagcgagttcattactctgagaagtaaatataagcctttcacttcggatgctgaagtc
ccagaccatgaccaaaacagtgaatttcaagataaagaaaagtgttctgtaactcttcag
gaagaaagtcccattgtttctaataacagaactgcagaggaaagaagtcgagaaagagca
gatgatgtcattgagattcaagcatcagacacccagtgccaagcgtactgcctcctagaa
gccgcagcgactcccgtcctaaagaagcttgtttgcctctgcacttaccctgctgctaat
tggaaatttgccactgtcgtttttgaccaaacaagattcttcttaaaggaacaagaaaaa
ctagtaaatgatgctgttcaccaaggtgagcatgctgacagagaaataacattcaggcat
gctgctctcttacatctcctggtgacaatgagagatgtccttttaacatgcagcttggat
acagcattaggctatttgtcaaatgcaaaggatatctacaaaagcatgttagactcctgc
ttggataacatttggagacagctgaaaattttacagtttattaaggaaaaaaggcctaaa
accaactataagatccaagaattgcaatgtcagatcctaagcaggttgcaaagtcaacaa
cagattaaggtactgattataataagaatggactcaaatggagaaaagcatttgcttttt
aaaacccttaagaaaatagaaggtttaacagtgactgttttacgttcaaatgagagaaaa
aaatttctagaaactaccggtgttgtcaaaggcacgagttcctgtgtggttgtgcataac
caccatatcggagcagatttcccctggagcagcttctcccttgtgctggagtacaatcac
gtggaacactcttgctgggccaggcactgccagcagttgaatatacccttcctggccttt
agagtcgtccttccagactcagcgctgaaaagagtcaccttgctggatagatttggtggg
tttctcttggaaattcaggtcccatacgtattttttgcatccgaaggactgcttaacatt
ccagaaatactccggctgttggaatctggctataatatcacactagtggagagaagctac
tgcgagtctctgaaactctttggaagcacagagcgctacgtggtactcacagttgacgag
cacactgctgtagtcgtgcaggacctagaagaattacattatgagaaggcatcagacaat
atcattatgcgattaatggcgctgtcattccagtatagctgttgttggataatactgtac
cccaaggagacattagattcagagtaccatctcacaccaaagacactccatcacctcgcg
cagatttatgcggccttggtttcctctggtcttaaatctgaagaactggatgtaaagctt
ataattgccccaggagtagaagagactgccttaacaattcgacaaatcgcagaccacaat
ttaatgacgtcgaagagagatcctcacgagtggttggataaatcctggattgaagtttca
ccatctaaggaagaaatgcatctgcttgattttccgtgcattaaccccctggtggctcag
ctcatgctgcaccgaacgccttcgctgcactggctattgagagcatcaccctctgagctt
caggaactcctgcccgaggttccagtcaaagtcctgaagcatttttgtagcatcacttcc
ttgttcaagattagttcttcctccatgacagagtcacctcgaatttcatcacttcaggaa
gatatgaatcaaactcatccctttatttctcagagttcagctcctgtcattcaagaacac
gatgaatattattcctacgaagacccggaagagacggtgcaggaaggcaccagcgcttct
ctgatggagctaagagaaagcatctgcaggccgacatctgcaacatctcacggccaggcc
agctcctggaacgacttcctgagtggccctaacacagtgcggaataacccttttccacgt
cataaggaaccacagaaagcatcttggcgctcctttccaagccagggtgattcggaatca
ggtgtcttttctctgggcctaacacacataaattgtgaacctgaaatgttaccaactgat
actcagaggagagtgactcatagttttgtgaattatcctagagccaaaggaagcagaagt
atgcaagtgtccagccccatctttttaccagagggctctccatcccacccttgttgggac
tttaagaaaaatactgatcaaaaacagatgtattcatccaggtcaagctgtagagcagag
cagaccacctacaacaaatggtgccctcaagaagatgacttcaccagtgattggccagag
tgtctgtcggctgaattggaagatttcacatacagacattcaaatgctgggactgaccag
actttctggagagaacggccatctgttcccagctgggattcattctatgcttctgattct
aatgtaaaccaaagaggattcaatggccttaatttctaccaaagagctgggaactactta
ggacagagaaagctccctgtatcttcatctaactgggaagattctgaaacaccaacaggc
ttaatgtactcacaagtaccacaacccaaaaaacgacgtctcatgtacgaaaaagtccct
ggaagaatggacgggcaaactcggctgaggtttttatga
DBGET
integrated database retrieval system
