Arvicola amphibius (Eurasian water vole): 119826770
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Entry
119826770 CDS
T08327
Symbol
Sox2
Name
(RefSeq) transcription factor SOX-2
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp04390
Hippo signaling pathway
aamp04550
Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04390 Hippo signaling pathway
119826770 (Sox2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04550 Signaling pathways regulating pluripotency of stem cells
119826770 (Sox2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
aamp03000
]
119826770 (Sox2)
Transcription factors [BR:
aamp03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
119826770 (Sox2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
119826770
NCBI-ProteinID:
XP_038204187
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All DBs
Position
11:43118103..43119065
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AA seq
319 aa
AA seq
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MYNMMETELKPPGPQQASGGGGGGGNTTAAATGGNQKNSPDRVKRPMNAFMVWSRGQRRK
MAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKT
LMKKDKYTLPGGLLAPGGNSMASGVGVGAGLGAGVNQRMDSYAHMNGWSNGSYSMMQEQL
GYPQHPGLNAHGAAQMQPMHRYDVSALQYNSMTSSQTYMNGSPTYSMSYSQQGTPGMALG
SMGSVVKSEASSSPPVVTSSSHSRAPCQAGDLRDMISMYLPGAEVPEPAAPSRLHMAQHY
QSGPVPGTAINGTLPLSHM
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgtataacatgatggagacggagctgaagccgccgggcccgcagcaagcttcggggggc
ggcggcggcggaggcaacaccacggctgcagcgaccggcggcaaccagaagaacagcccg
gaccgcgtcaagaggcccatgaacgccttcatggtgtggtcccgggggcagcggcgtaag
atggcccaggagaaccccaagatgcacaactcggagatcagcaagcgcctgggcgccgag
tggaaacttttgtcggagaccgagaaacggccgttcatcgacgaggccaagcggctgcgc
gctctacacatgaaggagcacccggattataaataccggccgcggcggaaaaccaagacg
ctcatgaagaaggataagtacacgcttcccggagggctgctggccccgggcgggaacagc
atggcgagcggggttggggtgggcgccggcctgggtgcgggtgtgaaccagcgcatggac
agctacgctcacatgaacggctggagcaacggcagctacagcatgatgcaggagcagctg
ggctacccgcagcacccgggcctcaacgcgcacggcgcggcgcagatgcagcccatgcac
cgctacgacgtcagcgccctgcagtacaactccatgaccagctcgcagacctacatgaac
ggctcgcccacctacagcatgtcctactcgcagcagggcacccccggcatggcgctgggt
tccatgggctcggtggtcaagtccgaggccagctccagcccccccgtggttacctcttcc
tcccactccagggcgccctgccaggccggggacctccgggacatgatcagcatgtacctc
cccggcgccgaggtgccggagcccgctgctcccagtagactgcacatggcccagcattac
cagagcggcccggtgcccggcacggccattaacggcacactgccgctgtcgcatatgtga
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