Arvicola amphibius (Eurasian water vole): 119827293
Help
Entry
119827293 CDS
T08327
Symbol
Ercc6
Name
(RefSeq) DNA excision repair protein ERCC-6 isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
119827293 (Ercc6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
aamp03036
]
119827293 (Ercc6)
03400 DNA repair and recombination proteins [BR:
aamp03400
]
119827293 (Ercc6)
Chromosome and associated proteins [BR:
aamp03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
119827293 (Ercc6)
DNA repair and recombination proteins [BR:
aamp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
119827293 (Ercc6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
Motif
Other DBs
NCBI-GeneID:
119827293
NCBI-ProteinID:
XP_038204759
LinkDB
All DBs
Position
12:32257964..32332690
Genome browser
AA seq
1479 aa
AA seq
DB search
MPHEEIPNSPQPQGQDCSPSQHVSTIEDMPVGQESGGDTEAGECLSTSCESGPSTSAEAC
VLAATRRGAPLLHIDRHQIPAVEPSAQALELQGLGVDVYDQAVLEQGVLQQVDSAMHEAS
RVAQVADAEKEYQSVLDDLMSCTTSLRQINKIIEQLSPQAATNRDVNRKLDSVKRQKYNK
EQQLKKITAKQKRLQAILGGTGAQVELDPASLEEEDAEPGPSCLGSMLMPAQEAAWEELI
RTGQMTPFGTPAPQKQEKKPRKIMLNEVSGFEKYLADQAQLSFERKKRGANRRVARKNMV
ASESSAGSNETKPDQRNQGLCQADKRLKKRIQKLQKRALQFQGKVGLPRGKKPLEPAVRL
EAEEDTDEEQSGSFPSDGEEEEQEEEEGVANLSSDDISYELKPLRKGQKRQKKTPVQEVD
DDFIPSSGEEDDALEARGGGRKVARCPDDGDEDYYKQRIRRWDQLRLQEKEQSTKQDDDS
EDSDTEFDEGFRVPSFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFL
AGLSYSKIRTRGSNYRFKGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYAHK
KERLIQDIVCCRGVLITSYSYIRLMQDDISKHDWHYVILDEGHKIRNPNAAVTLACKQFR
TPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKT
AYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTNEQHTVYQNFIDSKEVY
RILNGENQIFSGLVALRKICNHPDLFSGGPKNLSGLPEDELEEDQFGYWKRSGKMIVVES
LLKIWHKQGQRVLLFSQSRQMLHILEVFLRAHKYSYLKMDGTTTIASRQPLITKYNEDTS
IFVFLLTTRVGGIGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAG
TIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELFTLSSPDASQSTETSAIFAGTG
SDVQTPKCHFKKKTPPATETGPKCKKVSVSDRSANGAILTQEKSKAMGAAENATCRESGP
LKSDCHPSGSRTSSGAAVGEKTGAGSELEQLSAMSGDGKCSDFPTVDQSSGPSGEASTNE
KQGPSYKGECCQVQPEPVCRSERMEGHFCKHRSKRKHDVAKEVTPEKCLQSKQKSKHAKH
CRDAKFEGTRIPHLVKKRRYHQQNSEQASEAEERSSDDYVLEKLFKKSVGVHSVVKHDAI
MDGANPDYVLVEAEASRVAQDALKALKFSRQQCLGAASGVPTWTGHRGVSGAPAGMKNRF
GKKRNSILPVQRPSSQTEKCQNNVKKEGKASAPEHFSGREDGTFLSGAPSSSSLLARMRA
RNHLILPERLESDSGHLTEAAALPPSSTEHDDLLVEMRNFIAFQAQVDGQASTQEILKEF
ESKLSAAQSCVFRELLRNLCNFHRTPGGEGIWKLKPEYC
NT seq
4440 nt
NT seq
+upstream
nt +downstream
nt
atgccccatgaggaaatcccaaactcacctcaaccccaggggcaagactgttccccaagt
cagcatgtcagcaccatcgaagacatgccagttggacaggagagtggtggggacaccgag
gctggggagtgcctctctacgtcctgtgagtctgggccttccacatctgctgaagcttgt
gtgttggcagccacgaggcgaggggcacccctgctccacattgatcggcaccagattccc
gcggtggagcccagtgctcaggccctggagctccagggcctgggtgtggatgtgtacgac
caggcggtcctggagcagggcgtgcttcagcaggtggacagtgcgatgcacgaggccagc
cgtgtggcccaggttgccgacgcggagaaggagtaccagtcagtcctggatgacctcatg
tcatgtacaacatccttgaggcaaatcaataaaattatagagcaacttagccctcaagct
gccaccaacagagatgtcaacaggaaactagattctgtaaaacggcagaagtataacaag
gaacaacagctaaaaaagataactgcaaaacagaaacgtcttcaggccatccttggaggg
accggggcccaagtggaactggatcctgccagcctggaggaggaagatgcagagccaggg
ccatcatgtcttggcagtatgctcatgcctgcccaggaggccgcctgggaagagctgatc
cgcactggccagatgacaccgtttggtaccccagcccctcagaaacaggagaaaaagcct
agaaaaataatgctcaatgaagtatcaggctttgaaaaatatttggcagaccaagcacaa
ctgtcttttgaaaggaagaaacgaggggctaacagaagagtagctagaaaaaacatggtc
gcatctgagtcaagcgcaggatcaaatgagaccaaaccagaccagagaaaccaaggcctc
tgccaagcagataagcgtttgaagaagcgtatccagaagctccagaagagggcgctgcag
ttccaggggaaagtggggttgccacggggcaagaaacctctggagcctgcggtgaggctg
gaggcagaggaagacactgatgaggagcagtctgggtcctttccctctgatggggaggag
gaagagcaagaggaggaggaaggggtggccaatctgtcttccgatgacatcagctatgaa
ctgaagcctctgcggaagggccaaaaacgccagaagaaaaccccagtgcaggaggttgat
gatgactttatcccaagttctggggaagaagatgacgctctggaagcaagaggaggcggt
cgcaaggtagcgaggtgcccagacgatggtgatgaagattattataagcagcggataagg
aggtgggatcagctgaggctgcaggagaaagagcagtccacgaagcaggacgacgactct
gaggacagtgacaccgaattcgacgaaggcttcagagtgccaagcttcctcttcaaaaag
ctatttaagtatcagcagacaggtgttaggtggctgtgggaattgcactgccagcaggca
ggaggaattctgggagacgaaatgggattgggcaagaccatccagataattgccttcttg
gcaggtctgagctacagcaagatcaggactcgcggttcaaattacaggttcaagggactg
ggccccactgtgattgtctgcccaacgacagtgatgcaccaatgggtgaaagaattccac
acatggtggcctccattcagagtggcaattctgcatgaaacgggctcctatgctcacaaa
aaggagaggttgatccaagatattgtttgttgtcgtggagttttgataacctcttattcc
tacatccgactgatgcaagatgacattagcaaacacgactggcactatgtgatcctagat
gaaggacacaaaattcgaaatccaaatgctgcagtcacccttgcttgcaaacagttccgc
acgcctcatcggatcatcttgtctggctcacccatgcagaataatctccgagagctgtgg
tcactcttcgacttcatcttcccaggaaagctgggcacattgcctgtgtttatggagcag
ttctccgtccccatcaccatggggggatattccaatgcgtccccagtgcaggttaaaact
gcttataagtgtgcatgtgtcttaagagacaccattaacccatacctactgcggagaatg
aagtcagatgtcaagatgagcctttctttgccggataaaaatgagcaggtcttattttgc
cgtctaaccaatgagcagcatacagtctaccagaatttcattgattccaaagaagtttac
cggattctcaatggagagaatcagattttctctggacttgtagctctgaggaagatctgc
aaccaccctgatctcttttcgggtggtcccaagaatctcagtggtcttccagaagatgaa
ctagaagaagatcaatttggttactggaaacgttctgggaaaatgatcgttgttgagtct
ttgctgaaaatatggcataagcagggccagcgagtgctgctgttttcccagtcaagacag
atgctacacatactggaagtgttcctgagagcccacaagtattcctatctcaaaatggat
gggaccactaccatagcatcaagacagccattgattacaaaatacaatgaggatacgtcc
attttcgtcttccttttgaccacacgggtgggtggcataggagtgaacttgaccggggcc
aacagagtcatcatctacgaccctgactggaaccccagcaccgacacacaggcccgggag
cgagcgtggaggataggtcagaagaaacaggtgactgtctacaggctcctcacagccggt
accatcgaggagaagatctaccaccgacaaatcttcaagcaatttttgacaaacagagtg
ctaaaagacccaaaacaaaggcgcttcttcaaatccaatgatctttatgaactgtttact
ctgagtagtcctgacgcatcccagagcactgagacgagtgccatctttgcaggaaccggg
tccgatgtgcagacacccaaatgccactttaaaaaaaagactccaccagccacagaaaca
ggtcccaaatgcaagaaggtctctgtttctgacagatctgcaaacggtgccatcctgact
caagaaaaatctaaggcaatgggggcagcagaaaatgcaacttgtagagaaagtggccct
ttgaagagcgactgtcacccgagtgggagcagaaccagcagtggtgctgcagttggagaa
aagacaggtgcagggtccgagctggagcagctgtcagccatgagtggagatgggaagtgt
tcagattttccaaccgtggaccaatcatccgggccatctggtgaggcgagcaccaatgag
aagcagggtccttcctacaaaggggaatgctgccaggttcagccagaacctgtttgcagg
agtgaacgaatggaagggcatttttgtaagcacagatcaaaaaggaaacatgatgttgca
aaagaagtgaccccagagaaatgtctgcagtccaagcaaaagagcaagcacgccaagcat
tgtagagacgccaagtttgagggaactcggatcccacacctagtgaagaaaaggcgatac
caccagcagaactctgagcaggcgagcgaggccgaggaacgaagcagtgatgactatgtt
ttggaaaagcttttcaaaaaatcagtgggagtgcacagcgttgtgaagcatgatgccatc
atggatggggccaacccggattatgtgctggtagaggctgaagccagccgagtggctcag
gacgccttgaaagctctgaagttttctcggcagcaatgcctgggcgcagcatctggtgtt
cccacctggactggccacaggggtgtttctggtgcaccagcaggaatgaagaacaggttc
ggtaagaagaggaactccatcctccctgtgcagcgtccttcatcacaaacagaaaagtgt
cagaacaatgtgaaaaaggaggggaaagcttctgcccctgagcacttcagtggcagagaa
gatggaacttttttgtctggagcccccagttcctcctcactcctggccagaatgcgagcg
agaaaccacctcattctgccggagcgcttggagagcgacagcgggcacctcaccgaggct
gctgccttgcctccctccagcacggaacatgatgaccttctagtggagatgaggaacttc
attgctttccaggcccaggtggatggccaggccagcactcaggagatcttaaaggagttc
gaatccaagctgtctgcggcacagtcctgtgtcttccgagaactactgcgaaatctctgc
aatttccacagaactcctggtggtgaagggatttggaaactgaagccagaatactgctga
DBGET
integrated database retrieval system
