Arvicola amphibius (Eurasian water vole): 119827344
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Entry
119827344 CDS
T08327
Symbol
Rc3h1
Name
(RefSeq) roquin-1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
aamp03000
]
119827344 (Rc3h1)
04121 Ubiquitin system [BR:
aamp04121
]
119827344 (Rc3h1)
Transcription factors [BR:
aamp03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
119827344 (Rc3h1)
Ubiquitin system [BR:
aamp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
119827344 (Rc3h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf_CCCH_4
FYVE
zf-C3HC4_2
zf-CCCH_4
Vesi_VP2
PaaA_PaaC
Baculo_IE-1
TPD52
zf-RING_4
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
119827344
NCBI-ProteinID:
XP_038204891
LinkDB
All DBs
Position
12:complement(60472177..60552943)
Genome browser
AA seq
1130 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQIPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSAPMLPDE
SAVDLSSRKPPALPNGIVSAGSTVTQLIPRGTDPSFDSSLKPGKLDHLSSSAPGSPPDLL
ESAPKSISALPVNPHPVPPRGPADLPPMSVTKPIQMVPRGSQLYPAQQADVYYQDPRGTA
PAFEPPPYQQGMYYTPPPCVSRFVRPPPSAPEPGPPYLDHYPPYLQDRVINSQYGTQPQQ
YPPMYPSHYDGRRVYPAQSYAREEIFRESPIPIEIPSAAVPSYVPESRERYQQVEGYYPV
APHPAQIRPSYPRDPSYNRLPPPQPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPTL
PPAFHQEEFLDEEFKIAGKYKANDYSQYSPWSCDTIGSYIGTKDAKPKDVVAAGSVEMMN
VESKGMRDQRLELQRRAVETSDDDLIPFGDRPTVSRFGAISRTSKTLYQGAGPMQAIAPQ
GAPTKPISISDYSSYGAHGGWGDSPYSPHPNIPPQGHFIEREKISMAEVTSHGKTLLSAE
REQLRLELQQLNHQISQQTQLRGLEAVNNRLVVQREVNTLAGQPQPPPLPPKWPGMISSE
QLSLELHQVEREIGKRTRELSMENQCPMDMKNKLGTSKQAENGQPEPQNKVPAEDLALTF
SDVPNGSALTQENLSLLSNKTSSLNLSEDSEGGGDNKDSQRSGVTSSSAP
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggatttcctttcctgcccaatttgcactcagact
ttcgacgaaacaattcgaaagcccatcagtttgggctgtggccatactgtctgcaaaatg
tgcctgaataaactccaccgtaaggcttgcccgtttgaccagactactatcaatacagac
attgagctccttcctgtgaactcagcattactacagctagtgggtgctcagatccctgag
caacagcccattactttgtgtagtggggttgaagatacaaagcattatgaggaagccaag
aaatgtgtagaagaattagccttatacctgaaaccactcagcagtgctagaggagtgggt
ctgaatagcactactcagagtgttctgagtcgcccaatgcagaggaagcttgtgactcta
gtccactgccagctagtggaagaagaaggaaggatccgtgctatgagggctgctcgatct
ttaggtgaacgcacagttacagagctcattctccagcaccaaaatcctcagcagctctcc
tctaatctctgggcagcagtcagagctaggggctgccagttccttggaccagcaatgcag
gaggaagcactgaagcttgtcttgctggccttggaagatggttctgctttgtcacggaaa
gtgttggttctctttgtggtgcaaagactggaaccacgttttcctcaagcctctaaaacc
agcattgggcatgttgttcagctcctttacagagcctcctgcttcaaggtcaccaaacgt
gatgaagactcttctttgatgcagctgaaagaagaatttaggacttacgaagctctgcga
cgagaacatgactcccagatagtgcagattgctatggaagcaggcttaagaattgcacca
gaccagtggtcctctttgctttatggagaccagtctcacaaatctcatatgcagtccatt
attgacaagttgcagacccctgcctcctttgcacaaagtgttcaggagctaacaattgct
ctccagcgaactggagacccagcaaacttgaaccgactaagaccccacttggagctacta
gcaaacattgaccctagtccagatgctcctcctccaacatgggaacagttagaaaatggc
ctggttgctgtacgtacagtagtacatggactggtcgattatattcagaaccacagcaaa
aaaggagcagaccaacagcagcctccacagcatagcaaatacaaaacatacatgtgtcga
gatatgaagcagaggggaggatgccctcgtggggccagctgtacctttgcacactcacaa
gaagaactggaaaaatttcgtaaaatgaacaaacgtctggttcccagaagacccctgagt
gcctctttgggtcaacttaatgaggtgggcctgccttcagcacctatgcttcctgatgaa
agtgcagtggatttgtcgagcaggaaacctcctgcacttccaaatggaattgtatcggca
gggagcacagtgacacagctgattccacgtgggacagaccccagctttgattctagtctg
aagccaggaaagctagaccacctgagcagcagtgctcctgggtcccctcctgacctgctg
gaatctgctcctaagagtatttctgccttacctgtgaatccacatcctgtacctccaagg
gggccagcagatctgcctcccatgtctgtcaccaaaccaattcagatggtacctcgaggt
tctcagttatatccagcacaacaagcggatgtttattaccaggatcctcgaggaactgcc
ccagcatttgagccacctccttatcagcagggtatgtactatactccaccaccatgtgtg
tcccgctttgtccgacctccaccatctgctcctgaacctggtcctccatacttggatcat
tatccaccctacctccaagatcgtgtcataaactctcagtatggcacacaaccacaacag
taccctcctatgtacccatctcactatgatggtcgccgtgtgtaccctgctcagtcttac
gcaagagaggagattttccgggaaagcccaatacccattgagattccatctgcagcagta
ccatcctatgtgcccgagtccagagaacgataccaacaggtagagggttactatccagtg
gcccctcatccagctcagatcagaccttcataccccagggatccttcttataatcgactt
cctcccccgcaaccccatcctagcctggatgagctacatcgcagacggaaggaaataatg
gcccagctcgaggaaagaaaggttatctctccacctccttttgcaccttcaccaacattg
cctcctgcattccatcaagaagaatttttggatgaagaattcaagatagctgggaaatat
aaagcaaatgattatagccaatattctccttggtcatgtgataccatcggctcctacatt
ggaaccaaagatgcaaaacccaaagatgttgtggcagcagggagtgtggaaatgatgaat
gtagaaagtaaaggaatgagagaccagagattggaactccagaggagagcagtggaaact
agtgatgatgacctcatcccgtttggagaccgaccaacagtatctcggttcggtgccatc
tctcgaacatccaaaacactgtatcagggtgctggcccaatgcaggctatagcacctcag
ggagcacccacaaaacctatcagcatttcagattacagttcatatggagctcatggtggc
tggggagattctccatattcacctcatccaaacatacctcctcagggacacttcattgag
agggagaaaatatccatggcagaagtgaccagtcatggaaaaacccttctgtctgctgaa
agagaacaactacggttagaattgcagcaactgaaccatcagattagccagcagacccag
ctacgtggactagaggctgttaataaccgactggtggtacagagggaggtgaacaccctg
gcaggccagccacagccccctccactgcctccaaaatggcctggaatgatctcaagtgag
caactaagcttggaactacatcaggttgaaagggaaattggcaagagaacgcgggaattg
agtatggagaaccagtgtcctatggacatgaaaaacaaactgggtacaagtaagcaagca
gaaaatggacagccagagccacaaaacaaagtcccagctgaagaccttgcattgacattc
agtgatgtgccgaatggatcagctttgacacaggagaatctcagcctcctatcaaacaag
accagctctttgaacctgtcagaagactctgagggaggaggagataacaaagattcccag
agatcaggagttacttccagttctgctccctag
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