Arvicola amphibius (Eurasian water vole): 119827363
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Entry
119827363 CDS
T08327
Symbol
Smg7
Name
(RefSeq) protein SMG7 isoform X1
KO
K14409
protein SMG7
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119827363 (Smg7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamp03019
]
119827363 (Smg7)
Messenger RNA biogenesis [BR:
aamp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
119827363 (Smg7)
mRNA cycle factors
Common to processing body (P body) and stress granule
119827363 (Smg7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
119827363
NCBI-ProteinID:
XP_038204933
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All DBs
Position
12:68588738..68656825
Genome browser
AA seq
1165 aa
AA seq
DB search
MLLQIVIVGENVSFKSQMRTENLKSEEHLKSSNIRQAEVLKAEMTDSKLGPAEVWTSRQA
LQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFL
EAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCL
VHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV
KFPFPAASTNLQKALSKALESRDELKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREK
LEEQFKKLLFQKAFNSQQLVHVTVINLFQLHHLRDFSNETEQHSYSQDEQLCWTQLLALF
MSFLGILCKCPLQNDSQESYNAYPLPAVKVSMDWLRLRPRIFQEAVVDERQYIWPWLISL
LNSFHPHEDDLSNTNATPLPEEFELQGFLALRPSFRNLDFSKGHQGITGDKEGQQRRIRQ
QRLISIGKWIADNQPRLIQCENEVGKLLFITEIPELILEDPSETKENLILQETSVIESLA
TDGSPGLKSVLSTGRNPSNNCDPGEKPVVTFKENVKPREVNRDQGRSFPPKEVKSQSELR
KTPVSEARKTPVTQTPSQANNSQFIPIHHPGAFPPLPSRPGFPPPTYVIPPPVAFSMGSG
YTFPAGVSVPGTFLQSTAHSPAGNQVQAGKQSHIPYSQQRPSGPGPMNQGPQQSQPPSQT
PLTSLPAQPTAQSTSQLQVQALAQQQQSPTKVIPALGKSPPHHSGFQQYQQADASKQLWN
PPQVQGPLGKIMPVKQPYYLQTQDPIKLFEPSLQPPVIQQQPLEKKMKPFPMEPYNHNPS
EVKVPEFYWDSSYSMADNRAVMAQQPNMDRRSKRSPGVFRPEQDPVPRMPFEDPKSSPLL
PPDLLKSLAALEEEEELIFSNPPDLYPALLGPLASLPGRSLFKSLLEKPSELMSHSSSFL
SLTGFSVNQERYPNSSMFNEVYGKNLTASSKAELNPSVASQETSLYSLFEGTPWSPSLPA
SSDHSTPASQSPHSSNPSSLPSSPPTHNHNSAPFSNFGPIGTPDNRDRRPADRWKTDKPA
MGGFGVDYLSATSSSESSWHQASTPSGTWTGHGPSMEDSSAVLMENLKSIWSSSMMHPGP
SALEQLLMQQKQKQQRGQGAMNPPH
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgctcttgcagatagtcattgtgggagaaaacgtttcatttaagtcccagatgaggacc
gaaaacttgaaatcagaggagcatctgaaatcaagtaatattaggcaggcagaagtcctg
aaggctgaaatgacagattctaagctgggtccagctgaggtctggacatccaggcaagct
ctgcaggacttgtaccagaaaatgctagttactgatctggaatatgctttagacaagaaa
gtagaacaggatctctggaatcatgcctttaagaatcagatcacaacactacaaggccaa
gcaaagaatcgagcaaacccaaatcgtagtgaagttcaggcaaacctttctctgttccta
gaggcagctagtggcttctatactcagttattacaggaactgtgtacggtgtttaatgta
gatttgccatgccgtgtgaagtcttcccagttgggaattattagcaataaacagacgcac
accagcgccatagtgaagccacagtccagctcctgttcctacatttgccagcactgcctc
gtccaccttggagacattgctcgatacagaaaccagaccagccaggcagagtcctactat
aggcatgcagctcagcttgtcccctccaatggtcagccttacaatcagttggctatctta
gcttcttccaaaggagaccacctgaccacaattttctactactgcagaagcattgctgtg
aaattccctttcccagctgcctccaccaatctacagaaagcactttctaaagcactggaa
agccgggatgagttgaaaaccaagtggggtgtttctgacttcatcaaggcgtttattaaa
ttccatggccatgtatacctgagtaagagtttggaaaagttgagccctcttcgagagaag
ttggaagaacagtttaagaagctgctgttccaaaaagctttcaactctcagcagttagtt
catgtcactgtcattaatctgtttcaacttcatcatcttcgtgactttagcaatgaaaca
gagcagcatagttacagccaagatgaacagctatgctggacccagttgctggccctcttt
atgtcttttcttggcatcctgtgcaaatgtcctctccagaacgattctcaggagtcctac
aatgcctatccccttcctgcagtcaaggtctccatggactggctaagactccgacctcga
atctttcaggaagcagtggtggatgaaaggcagtacatttggccctggctaatttctctt
ctaaatagtttccatccccatgaagatgatctctcaaatactaatgccacacctcttcca
gaagagtttgaattacaaggattcttggctttaagaccttctttcaggaacttggatttt
tccaaaggccatcagggtattacaggagacaaagagggtcaacagaggcgaatacgacag
cagcgtttgatctccatagggaaatggattgccgacaatcagccacggttgattcagtgt
gaaaatgaggtagggaaattgttatttatcacagaaattccagaattaatattagaagac
cccagtgaaaccaaagagaacctcatcctacaagaaacatctgtgatagaatcactagct
accgatggaagcccaggactgaagtcagtgctgtctacaggccgaaatccaagcaacaac
tgtgacccaggagaaaaaccagtggtcaccttcaaagagaatgttaaaccacgagaagtg
aacagagaccaaggaagaagctttcctcccaaagaggtaaaatcccagtcggaactaaga
aagactccagtgtctgaagccaggaaaacacctgtcactcaaactccaagtcaagcgaat
aattctcagttcatccccattcatcaccccggagctttccctcctcttcccagccgacca
gggttcccgcccccaacatatgttataccccctcctgtggcattctctatgggctcaggt
tacaccttcccagctggtgtttctgtcccaggaacctttcttcagtctacagctcactct
ccagcaggaaaccaggtgcaagctgggaaacagtcccacattccttacagccagcaacgg
ccctctggaccagggccaatgaaccagggacctcaacaatcacagccaccttcccagaca
ccccttacatctttaccagctcagccaacagcacagtctacaagccagttgcaggttcaa
gctctagctcagcagcaacaatcccctacaaaagtcataccagctttggggaaaagccca
cctcatcactctggattccagcagtatcaacaggcagatgcctccaaacagctgtggaat
ccccctcaggttcaaggcccactagggaaaattatgcctgtgaaacagccctactacctt
cagacccaagaccctataaaactgtttgagccgtcattgcaacctcctgtaatacagcag
cagcctctggagaaaaaaatgaagcctttccccatggagccatataaccacaatccctca
gaagtcaaggtcccagagttctactgggattcttcctacagcatggctgataacagagca
gtaatggcacagcaaccaaatatggaccgcagaagcaaacggtccccaggagtcttccgt
ccagagcaggaccctgtgcccaggatgccattcgaggatcccaagagctcccctctgctt
cctccggacctgttaaagagtctggctgccttggaggaagaggaagagctgatcttttct
aaccctcctgatctttacccagctctgctgggtcctctcgcctctcttcctggacgaagc
ctctttaaatccttattggagaagccttcagaactcatgtcacattcatcttctttcctg
tccctcactggattctcggtcaatcaggaacgatatccaaacagcagtatgttcaatgaa
gtgtatgggaaaaacctgacagccagctccaaggcagaactgaacccctcagttgcctcc
caggaaacatcactgtactccctttttgaagggaccccctggtctccatcacttcccgcc
agttcagatcattcaacaccagccagccagtctcctcattcctctaacccaagcagcctg
cccagttctcctccaacacataaccataattctgctccattctctaattttggacccatt
gggacgccagataacagggataggcggcctgcagatcggtggaaaactgataaaccagcc
atgggtggttttggcgttgattatctctcagcaacatcgtcctctgagagcagttggcat
caggctagcactccaagtggcacctggacaggccacggcccctccatggaggattcctcc
gctgtcctcatggaaaacttaaagtctatctggtccagttccatgatgcatcctggaccc
tccgctctggagcagttgttaatgcagcagaagcagaaacaacagcggggacaaggtgcc
atgaaccctccacactga
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