Arvicola amphibius (Eurasian water vole): 119827442
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Entry
119827442 CDS
T08327
Symbol
Rxrg
Name
(RefSeq) retinoic acid receptor RXR-gamma isoform X1
KO
K08526
retinoid X receptor gamma
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03320
PPAR signaling pathway
aamp04659
Th17 cell differentiation
aamp04919
Thyroid hormone signaling pathway
aamp04920
Adipocytokine signaling pathway
aamp04928
Parathyroid hormone synthesis, secretion and action
aamp05200
Pathways in cancer
aamp05202
Transcriptional misregulation in cancer
aamp05207
Chemical carcinogenesis - receptor activation
aamp05216
Thyroid cancer
aamp05222
Small cell lung cancer
aamp05223
Non-small cell lung cancer
aamp05226
Gastric cancer
aamp05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09150 Organismal Systems
09151 Immune system
04659 Th17 cell differentiation
119827442 (Rxrg)
09152 Endocrine system
04920 Adipocytokine signaling pathway
119827442 (Rxrg)
03320 PPAR signaling pathway
119827442 (Rxrg)
04919 Thyroid hormone signaling pathway
119827442 (Rxrg)
04928 Parathyroid hormone synthesis, secretion and action
119827442 (Rxrg)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
119827442 (Rxrg)
05202 Transcriptional misregulation in cancer
119827442 (Rxrg)
05207 Chemical carcinogenesis - receptor activation
119827442 (Rxrg)
09162 Cancer: specific types
05226 Gastric cancer
119827442 (Rxrg)
05216 Thyroid cancer
119827442 (Rxrg)
05222 Small cell lung cancer
119827442 (Rxrg)
05223 Non-small cell lung cancer
119827442 (Rxrg)
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
119827442 (Rxrg)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
aamp03000
]
119827442 (Rxrg)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
aamp03310
]
119827442 (Rxrg)
Transcription factors [BR:
aamp03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
119827442 (Rxrg)
Nuclear receptors [BR:
aamp03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
119827442 (Rxrg)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nuc_recep-AF1
Hormone_recep
zf-C4
Motif
Other DBs
NCBI-GeneID:
119827442
NCBI-ProteinID:
XP_038205083
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All DBs
Position
12:complement(54063054..54105553)
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AA seq
472 aa
AA seq
DB search
MYGNYSHFMKFPTGFGGKDLTWASRCSPGHAGSTSMNPSAALPTGKPMDSHPSYTDTPVS
APRTLSAVGTPLNALGSPYRVITSAMGPPSGALAAPPGINLVAPPSSQLNVVNSVSSSED
IKPLPGLPGIGNMNYPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDL
IYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECANSGH
EDMPVERILEAELAVEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFS
DLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVL
TELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPE
QPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLETPLQIT
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgtatggaaattattcccacttcatgaagtttcccaccggctttggtggtaaggacctc
acttgggcttcacgatgctcccctggccatgctggctccacatccatgaacccatcagca
gccttgcccacagggaagccaatggacagccaccccagctacacggacaccccagtgagt
gccccacggacactgagtgctgtggggacccccctcaatgccctcggttcaccataccga
gtcatcacttctgccatgggtccaccctcaggagccttggcagcccctcctggcatcaac
ttggtggccccacccagctctcagctaaatgtggtcaacagtgtcagcagctctgaggac
atcaagcccttaccaggtctgcctgggattggaaacatgaactacccatccaccagccct
gggtctctggtgaaacacatctgtgccatctgtggggacagatcctcaggcaaacactac
ggtgtgtacagctgcgaaggctgcaaaggcttcttcaaaagaaccataaggaaagacctc
atctacacctgccgggataacaaagattgcctcatcgacaagcgccagcgcaaccgctgc
cagtactgccgctaccagaagtgcctggtgatgggcatgaagagagaagctgtgcaggaa
gaaaggcagaggagccgggagcgagctgagagtgaggcagaatgtgccaacagtggccac
gaagacatgcctgtggagaggattctagaagctgagcttgctgtggaaccaaagacagaa
tcctacggtgacatgaacatggagaactcgacgaatgatcctgttactaacatatgccat
gctgcagacaagcagcttttcacccttgttgagtgggccaaacgcatcccccacttctca
gatctcaccttggaggaccaggtcattctgctccgggcagggtggaatgaattgctgatt
gcctccttctcccaccgctcggtatctgtccaagatggcatcctgctcgccacaggcctc
catgtccacaggagcagtgctcacagtgccggtgttggctccatctttgacagagtcctc
acagagctggtttccaagatgaaagacatgcagatggataagtcagagctcgggtgcctg
cgggccattgtgctctttaacccagatgccaagggtttgtccaacccctctgaggtggag
actcttcgagagaaggtttatgccacgctcgaggcctacaccaagcagaagtatccggaa
caaccaggcaggtttgccaagctgctgctgcgcctcccggctctgcgctccatcggcttg
aaatgcctggagcacctcttcttcttcaagctcattggggacacccccattgacaccttc
ctcatggagatgttggagaccccactgcagatcacctga
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