Arvicola amphibius (Eurasian water vole): 119827467
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Entry
119827467 CDS
T08327
Symbol
Capn1
Name
(RefSeq) calpain-1 catalytic subunit
KO
K01367
calpain-1 [EC:
3.4.22.52
]
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp04141
Protein processing in endoplasmic reticulum
aamp04210
Apoptosis
aamp04217
Necroptosis
aamp04218
Cellular senescence
aamp04382
Cornified envelope formation
aamp05010
Alzheimer disease
aamp05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
119827467 (Capn1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
119827467 (Capn1)
04217 Necroptosis
119827467 (Capn1)
04218 Cellular senescence
119827467 (Capn1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
119827467 (Capn1)
09160 Human Diseases
09164 Neurodegenerative disease
05010 Alzheimer disease
119827467 (Capn1)
05022 Pathways of neurodegeneration - multiple diseases
119827467 (Capn1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
aamp01002
]
119827467 (Capn1)
Enzymes [BR:
aamp01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.52 calpain-1
119827467 (Capn1)
Peptidases and inhibitors [BR:
aamp01002
]
Cysteine peptidases
Family C2: calpain family
119827467 (Capn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
EF-hand_6
EF-hand_1
EF-hand_8
EF-hand_7
CAPN13-like_C_EFh
Motif
Other DBs
NCBI-GeneID:
119827467
NCBI-ProteinID:
XP_038205119
LinkDB
All DBs
Position
1:complement(149908258..149933806)
Genome browser
AA seq
713 aa
AA seq
DB search
MAEEFITPVYCTGVSAQVQKQRAKDLGLGRHENAIKYLGQDYEKLRARCLQSGVLFQDEA
FPPVTHSLGFKELGPNSSKAYGIKWKRPTELLSNPQFIVDGATRTDICQGALGDCWLLAA
IASLTLNETILHRVVPYGQSFQDGYAGIFHFQLWQFGEWVDVVVDDLLPTKDGKLVFVHS
AQGNEFWSALLEKAYAKVNGSYEALSGGCTSEAFEDFTGGVTEWYDLHKAPSDLYQIILK
ALDRGSLLGCSIDISNIRDLEAITFKNLVRGHAYSVTAAKQVIYQGQRVSLIRMRNPWGE
VEWKGPWCDSSSEWNKVDPYEREQLRIKMEDGEFWMSFQDFTREFTRLEICNLTPDALKS
RTLRNWNTTLYEGTWRRGSTAGGCRNYPATFWVNPQFKIRLEEVDDEDDYDRRESGCSFL
LALMQKNRRRERRFGRDMETIGFAVYEVPRELVGQPVHLKRDFFLANSSRARSETFINLR
EVSNRIRLPPGEYVVVPSTFEPNKEGDFVLRFFSEKKAGTQELDEQIQANLPDERVLSEE
EIDDTFKTLFSKLAGEDMEISVKELQTILNRIISKHKDLRTDGFSLESCRSMVNLMDRDG
NGKLGLVEFNILWNRIRNYLTIFRKFDLDKSGSMSAYEMRMAIEAAGFKLNKKLHELIIT
RYSEPDLAVDFDNFVCCLVRLETMFRFFKALDTDLDGVVTFDLFKWLQLTMFA
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggagttcatcacacctgtgtactgcaccggggtatcagcccaagtgcaaaaa
cagcgtgccaaggacctgggcctgggccgccatgaaaacgccattaagtacctgggccag
gattatgaaaagctgcgggcaagatgcctgcagagtggggtcctcttccaagatgaggcc
ttccctccggtgactcacagcctgggcttcaaagaactgggtcccaattcctctaaagcc
tacggcatcaaatggaagcgtcctacggagctgctgtcaaacccccaattcatcgtggat
ggagccacccgaacagacatctgccagggagcactgggggactgttggctcctggctgcc
attgcctccctcaccctcaacgagaccattctacaccgagtggttccctacggccagagc
tttcaggatggatatgctggcatcttccatttccagctgtggcagtttggggagtgggtg
gacgtggtcgtggatgacttgctgcccaccaaggacgggaagttggtgttcgtgcactct
gcccagggcaacgagttctggagtgccctgcttgagaaggcctatgccaaagtgaatggc
agctacgaggccctctcaggaggctgcacctcagaggcctttgaggattttactggtggg
gtcaccgagtggtatgatctgcacaaggcaccaagcgacctctaccagatcattctgaag
gccctggaccgaggctccttgctgggctgctccattgatatctccaatatccgggatttg
gaggctattacctttaagaacctggtgaggggccatgcgtactctgtgacggctgccaag
caggtgatttaccagggccagcgggtgagcctaattcgaatgcggaacccctggggcgaa
gtggaatggaaaggaccctggtgtgatagctcctcagagtggaacaaagtggacccctat
gagcgagagcagctgaggatcaagatggaggatggggagttctggatgtcattccaagac
ttcacacgtgagttcaccagactggagatctgcaacctcacacctgatgctcttaagagc
aggaccctccggaactggaatacgacactatatgagggcacctggcgccgagggagcaca
gctggtggctgcaggaactacccagctaccttctgggtgaacccacagttcaagatccgg
ttggaggaggtggatgacgaagatgactatgacaggcgcgagtcgggctgcagcttcttg
ttggcgctcatgcagaagaaccgtcgcagggagcggcgctttggccgggacatggagacc
attggtttcgcggtgtacgaggtcccacgggagctggtgggtcagcctgtgcacttgaag
cgggacttcttcctggccaactcctctcgggcgcgttcagagaccttcatcaacctccga
gaggtcagcaaccgcatccgcctcccgccgggggagtatgtggtagtgccctccaccttc
gagcccaacaaggagggtgactttgtgttgcgtttcttctcagagaagaaagctgggacc
caggagctagatgaacagatccaggccaacctccctgatgagagagtgctgtctgaagag
gagatcgatgacaccttcaaaaccttgttcagcaagctggcaggggaggacatggagatc
agtgtcaaggagctgcagaccatcttgaacaggataattagcaaacacaaagacctgcgg
accgatggcttcagcttggagtcatgtcgcagcatggtgaacctcatggaccgtgatggc
aatgggaagctgggcctggtggaattcaacatcctgtggaaccgcatccgaaattacctg
accattttccggaagtttgacctggacaagtccggcagcatgagcgcctacgagatgagg
atggccatcgaggccgcaggcttcaagcttaacaagaagctgcatgaactcatcatcacc
cgctactcagagcctgacctggccgtggacttcgacaacttcgtgtgttgcctcgtacga
ctggagaccatgttccggtttttcaaagctcttgacacagacctggatggtgttgtgacc
tttgatctatttaagtggttacagctgacgatgtttgcatga
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