Arvicola amphibius (Eurasian water vole): 119827471
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Entry
119827471 CDS
T08327
Symbol
Cop1
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp04115
p53 signaling pathway
aamp04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
119827471 (Cop1)
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
119827471 (Cop1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
aamp04121
]
119827471 (Cop1)
Enzymes [BR:
aamp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
119827471 (Cop1)
Ubiquitin system [BR:
aamp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
119827471 (Cop1)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
119827471 (Cop1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_EIPR1
zf-C3HC4_2
WDR55
Beta-prop_RIG_2nd
EIF3I
zf-C3HC4
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
zf-RING_UBOX
Beta-prop_CAF1B_HIR1
zf-RING_2
Beta-prop_EML
zf-C3HC4_3
Beta-prop_DCAF4
zf-RING_5
zf-C3HC4_4
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
RING_XB3-XBAT31
Beta-prop_WDR35_TULP_N
Beta-prop_Vps41
WD40_like
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_IFT122_1st
zf-RING_4
zf_C2H2_10
zf-RING_11
Sina_RING
zf-Nse
Motif
Other DBs
NCBI-GeneID:
119827471
NCBI-ProteinID:
XP_038205120
LinkDB
All DBs
Position
12:complement(62165354..62304272)
Genome browser
AA seq
746 aa
AA seq
DB search
MSGSRQAGSGSAGTSPGSSAASSVTSASSSLSSSPSPPSAAASAATLVSGGAAPAAGSGS
LGGPGRPVLVAAAVSGSGNGGASGGGAVSAGLSRLSCAARPSAGIGGSSTSLGSSSSSSS
SSSSRKRPLLAPLCNGIHNSYEDKSNDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLED
NNNRCPKCNYVVDNIDHLYPNFLVNELILKQKQRFEEKRFKLDHSVSSTNGHRWQIFQDL
LGTDQDNLDLANVNLMLELLVQKKKQLEAESHAAQLQILMEFLKVARRNKREQLEQIQKE
LSVLEEDIKRVEEMSGLYSPVCEDSTVPQFEAPSPSHSSIIDSTEYSQPSGFSGTSQTKK
QPWYNSTLASRRKRLTAHFEDLEQCYFSTRMSRISDDSRTASQLDEFQECLSKFTRYNSV
RPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVYEYGTVIQDAVDIHYPEN
EMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDFNLMD
PKLLASGSDDAKVKLWSTNLDNSVASIEAKANVCCVKFSPSSRYHLAFGCADHCVHYYDL
RNTKQPIMVFKGHRKAVSYAKFVSGEEIVSASTDSQLKLWNVGKPYCLRSFKGHINEKNF
VGLASNGDYIACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCW
RALSDGESNVLIAANSQGTIKVLELV
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggtagccgccaggccggctcgggttccgctgggacgagccccggttcctcggcg
gcctcttcggtgacttccgcctcctcgtccttatcctcgtctccgtcgccgccttccgcg
gcggcctcggcggcgactctggtgtccggcggggcggctccggccgcgggctcgggtagc
ctcggcggcccggggcggcctgtgctggtggcggccgcggtgtccggcagcggcaacggc
ggcgccagcggcggcggggcggtgtccgcgggcctgtcccggctcagctgcgcggccagg
ccaagcgccggtattggagggagcagcaccagcctgggcagcagcagcagcagcagcagc
agcagtagtagcaggaagcgacctctgcttgccccgctctgcaacgggatccacaactcc
tacgaggacaaaagcaacgacttcgtctgccccatctgctttgatatgattgaagaggca
tacatgacaaaatgtggccatagcttttgctacaagtgtattcatcagagtttggaggac
aataataatagatgtcccaagtgtaattatgttgtggacaatattgaccatctctatcct
aatttcttggtgaatgaactcattctcaaacagaagcaaagatttgaggaaaagaggttc
aagttggaccactcagtgagtagcaccaatgggcataggtggcaaatatttcaagatttg
ctaggaactgatcaggataaccttgatttggccaatgtcaacctcatgttggaattacta
gtgcagaagaagaaacaactggaagcagaatcacatgcagctcaactacagatccttatg
gaattcctcaaggttgcaaggagaaataagagagagcaattggaacagatccagaaggaa
ctaagtgttttggaagaggatattaaaagagtggaagaaatgagtggcttgtactctcct
gtctgtgaagatagcacagtgcctcagtttgaagctccttctccatcacacagtagtatt
attgattctacagaatacagccaaccttcaggtttcagtgggacttctcagacaaagaaa
cagccttggtataacagcacattagcatcaagacgaaaacgactcactgctcattttgaa
gacttagagcagtgttatttttctacaaggatgtctcgtatctcagatgacagtagaact
gcaagccaattagatgaatttcaggaatgtttgtccaagtttactcgatacaactcagta
agaccattggccacgttatcatatgctagtgatctctataatggttccagcatagtttct
agtatcgaatttgatcgggattgtgactattttgcaattgctggggttacaaagaagatt
aaagtctatgaatatggcacagtcatccaggatgcagtggatattcattaccctgagaat
gaaatgacctgcaattccaaaatcagctgtatcagttggagtagttaccataagaatctg
ctagccagcagtgattatgaaggcactgttatactatgggatggattcacaggacagagg
tcaaaagtctatcaggagcatgaaaagaggtgttggagtgttgactttaatttgatggat
cctaaacttttggcttcaggttctgatgatgcaaaagtgaagctgtggtctaccaattta
gacaattctgtggcaagcattgaggcaaaggctaacgtctgctgtgtgaaattcagtccc
tcctccagataccatttggcttttggctgtgcagatcactgtgttcactactatgatctt
cgtaacactaaacaaccaataatggtattcaagggacacagaaaagcagtctcttatgcc
aagtttgttagtggtgaagaaattgtctctgcctcaacagacagccagctaaaactgtgg
aatgtggggaaaccatattgtctgcgttccttcaagggtcatattaatgaaaaaaacttt
gtaggacttgcttccaatggagattatatagcttgtggaagtgaaaacaattccctctac
ctgtactataaaggactttctaagactttgctgacttttaagtttgatacagtcaagagt
gttctggacaaagaccggaaagaagatgatacaaatgaatttgttagtgctgtgtgttgg
cgggcactatcagatggggagtccaatgtgttgattgctgctaacagccagggtacaatt
aaggtgctagaattggtgtaa
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integrated database retrieval system
