Arvicola amphibius (Eurasian water vole): 119827868
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Entry
119827868 CDS
T08327
Symbol
Vps13a
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
aamp04131
]
119827868 (Vps13a)
Membrane trafficking [BR:
aamp04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
119827868 (Vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Mer2
Motif
Other DBs
NCBI-GeneID:
119827868
NCBI-ProteinID:
XP_038205728
LinkDB
All DBs
Position
1:complement(158357994..158568960)
Genome browser
AA seq
3167 aa
AA seq
DB search
MVFESLVVDVLNRFLGDYVVNLDKSQLSLGIWKGAVVLKNLEIKENALSELDVPFKVKVG
HIGSLTLKIPWKNLYTQPVEAVLEEIYLLIVPSSRIKYDPIKEEKQLMEAKQQELKRIEE
AKQKVVDQENPPEEKQDTFSEKLITQIIKNLQVKISNIHVRYEDDITNQDKPLSFGISLQ
NLSMQTTDQNWIPCLHDETEKLVRKLIRLDNLFAYWNVKSQMYYLNDYDESLVALKNGIV
NENIVPDGYDFVFRPISANAKLQMNRRSDFDFSDPKINLDVELHTIVIEFNKPQYFSLME
LLESIDMMKQNLPYRKFKPSVPLHYHAKEWWAYAIHGILEVNVCPHLRMWSWKHIRDHRQ
KMKQYREFYKKKLTSKKPSPEILMSLEELEKTLDVFNITIARQQAEVEVKKAGYKIYKEG
VKDPEDNAGWFSWLWTWSESNAKQQLEVKPGILEEMLTPEEKVLLYEAIGYSETAVDPTL
PKTFEALKFFVHLKSMSVILRENHQKPELVNIIVEGLSTLIVQRPGAQAIKFETKIDSFY
ITGLPDNSRKPHLLSSLDDMSLFQITFETNPLDETVAQRCIIEAEPLEIIYDARTVNSIV
EFFRPPKDVHLAQLTSATLTKLEEFRDKTATGLLYIIETQKVLDLRINVKASYVIVPQYG
IFSPTSNLLLLDLGHLKVTSKSRSGVSEMKPSNTSLEEIMHKAYDSFDIQLTSIQLLYSR
VGDNWKEARKLNVSTQHILTPMHVNVELSKAMVFMDIKMPKFKISGKLPLISLRISDKKL
QGIMELFESIPKPEPITDMSAPAKSFQIHASTLPASQISQKLIPLLEQPSVAEDDSEEEF
FDAPCSPLEEYPQILSRVRSSRHKKLQKKESSVNLIQLRMRFEVAEVLIQFYHLVGDCEL
PVLEMGVLGLGTEVEIRTFDLKANAFLKEFWLKCPEYLDENKKPIYLITTLDNTMEDLLT
LEFVRVEKNAPSLKSTYNNVLQLIKVNFSSLDIHLHTEALLNTMNYLNNTLPQLGEQSAP
VSVAETEDKGDLIKMLALKLPTNEDTITLQLLAELSCLRIFIQDQKQKISEIKIEGLDSE
MIMKPLVTEINAKLRNIIVLDSDKMAVYKKAVYITGKEVFSFKMISYMNATAGSAYTDMN
VVDVQVNLTVGCIEVMFVTKFLYSILDFIDNFQAVKNALAEATAQAAGMAADGVMELARR
SSRLALDVNIKAPIVVIPQSPVSHNVFVADFGLITMKNTFVTVTEIQSNLPPVIDLITIK
LSEMRLYRSQFMTNAYQEVLDLLLPLNLEVIVERNLSWEWYKEVPCLNVKAQLKPMEFIL
SQEDLTTIFQTLYGNIWYGRDVSVPSSVSKDSEIMTSGANHVSNHSGTMVTAAVVEVHPQ
ASQVNTTLNVSFRTDYLTMALYSPGPEQAFFTDVRDPSLKLAEFKLENIISSLKLYTDGS
TFSSFSLKNCILDDKRPHVMKATPRMIGLTLGFDKKDMVDVKYRRIRDAFVTDAIVQEMY
VCASVEFLMTVAHVFFDAYMTSTALETSVQAWTTKEEPPQDLGKWEINILIKNPEIVFVA
DMTRNDAPALVITTQCEICYKGDPESNTVTAAIKDLQVRACPFLPAKRKGKITTVLQPCD
LFYQATQIGTDPQMIDISVKSLTLKVSPVIINTIITITSALYTTKETIPEENTSSIAHLW
DKKDTKNLKMWFLEESDETEKVVPSNELVPGGETLNLNIDSIFIVLEAGVGHRTVPMLLA
KSRILGESKNWSTLINLHCQLELEVHYYNEMFGVWEPLLEPLEIDQTDDFRPWNLGIKMK
KKAKESIVESDSEEENYKVPEYKTVISFYSKDQLNITLSKCGLVMLNNLVEAFTEAATGS
SAVFLRDLAPFMILNSLGLTVSVSPSDSFNVLNVPMAKSYELKNEESLSMDYVRTKDSDH
FNAMTSLSSKLFFIILTPVNHSAADKIPLTKVGRRLYTVRHRESGVERSIVCQIDTVEGS
KKVTIRSPVQIKNHFSIPISVFEGDTLLGIASPENEFNIPLASYRSSLSLKPDDKDYQMC
EGIDFEEIIKYDGQLLRKKCKSIHASKRSFVINIVPEKDNLTSLSVYSEDGWDLPYVMHL
WPPVLIRNLLPYKIVYYLEGIENTVFTLSEGHSSQIYNVEMDKAKLHLKLLDYLNHDWKS
EFHIKPNQQDINFINFTCLTEMEKTDLDIAIHMTYNTGQTIVAFHSPYWMVNKTDRMLQY
KADGIHRKHPPNYKKPVLFSFQPNHFFNNNKVQLMVTDSELSDQFSIDTVGSHGAIKCKG
LKMEYQVGVTINLSSFNITRIVVFTPFYMIKNKSKYRISVAEEGSDKWLSLDLDQCIPFW
PEDASNILLIQVERSEGPPKRIHFNKQDSCILLRLNNELGGIIAEVNLAEHSTVITFSDY
HDGAATFLLINHTKNDLVQYKQSSLSEIEDSLPPGKAVYYTWADPVGSRKLKWSCGQSHG
EVTHKDDMMTPISVGKKTIYLVSFFEGLQRIILFTEDPKVFKVTYESEKAELAEQEIVLA
LQDVGISLVNNYTKQEVAYIGITSSDVVWETKPKKKARWRPMSIKHTEKLEKEFKEYTES
SPLEDKVIELDNNIPVRLTPSGNDMKILQPHVIAVRRNYLPALKVEYNTSAHQSSFRIQI
YRIQIQNQIHGAIFPFVFYPIKPPKSVTMDSAPKPFTDVSIVMRSAGHSQISRIKYFKVL
IQEMDLRLDLGFVYAIADLVTKAEVTENTEVEYFHKDVETFEQEYETVSSVDQSQINLFE
YFHISPIKLHLSVSLSSGREEAKDSGQRGGLIPVHSLNLLLKSIGATLTDVQDVVFKLAF
FELNYQFRTTSELQSEVIRHYSKQAIKQMYVLILGLDVLGNPFGLIREFSEGVEAFFYEP
YQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITSAMAKGVAAMTMDEDYQQKRRE
AMNKQPAGLREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVA
RPTGGIIDMASSTFQGIKRATETFEVESLRPPRFFNEDGVIRPYRLRDGTGNQMLQVMEN
GRFAKCKYFTHVMINKTDMFMITRSGVLFVTKGTFGQLTCEWQYSFDEFTKEPFIVHGRR
LRIEAKERVKSVFHAKEFGKIINFKTPEDARWILTKLEEAREPSPSL
NT seq
9504 nt
NT seq
+upstream
nt +downstream
nt
atggtatttgagtccttggtcgtggacgtgttgaaccggttcctgggcgactatgtggtg
aacctggacaagtctcagctctctctgggcatttggaaaggagccgtggtcctcaagaac
cttgaaattaaagaaaatgcattgagtgaattggatgtaccattcaaagttaaggttggt
catataggtagtcttacacttaaaattccatggaaaaatctttatactcaaccagttgaa
gctgttttggaagaaatctatttacttatagtgccttcttctagaataaaatatgatcct
atcaaagaagaaaagcaactcatggaagcaaagcagcaggaactaaaaagaatagaagaa
gcaaagcagaaagtagttgatcaagaaaatcctccggaggagaaacaggacactttttca
gaaaaattaattactcaaatcataaaaaatcttcaagtgaaaatttccaatatccatgtt
cgttatgaagatgatatcacaaatcaagacaaaccactctcatttggtatttcccttcag
aatctcagcatgcagacaactgatcaaaattggattccatgtttacatgatgaaactgaa
aaactagttcgtaagctaatccgattagataatctctttgcttactggaatgtgaagtct
cagatgtattatctgaatgattatgacgaatcattggttgccttgaaaaatggtattgtc
aatgaaaatattgttccagatggttatgattttgtttttcgacctatatctgctaatgcc
aagcttcagatgaaccggcgatcagattttgacttttctgaccccaaaataaacctggat
gttgagctacataccatagtgattgagtttaataaaccacagtatttcagtctcatggag
ctcctcgagtccattgacatgatgaaacaaaacctgccctacagaaagttcaagcccagc
gtgcctcttcactaccatgccaaagaatggtgggcttatgctatacacggtattcttgaa
gtaaatgtttgtccccatttacggatgtggtcttggaagcatattagagaccatagacaa
aaaatgaaacaatatagagaattttataagaaaaagttaacaagtaagaagccatctcct
gaaattctcatgtctttggaggagttggagaaaaccttggatgtttttaatataaccata
gctaggcaacaggcagaagttgaggtaaagaaagctggatacaagatttacaaagaagga
gtaaaagatccagaggataatgcaggatggtttagctggctgtggacgtggtcagaatca
aatgctaaacaacaactagaagttaaacctgggattcttgaagaaatgttgacacctgaa
gaaaaagttttgctttatgaagcaattggttatagtgaaacagcagttgatccaaccttg
ccaaaaacatttgaagccttgaagttttttgttcacttgaaaagtatgtctgttatccta
agagaaaaccaccaaaaaccggagctggtaaacattatagtagaaggacttagtactttg
attgttcaaaggccaggagcacaagccataaaatttgaaaccaaaattgattcattttat
attactggccttccagataattcaagaaaaccccacctactgtcttcattggatgatatg
tcactcttccagattacgtttgagacgaaccctttagatgaaactgttgctcagaggtgt
atcatagaggctgagcctttagagataatatacgatgcaaggacagtcaatagtatagtg
gagtttttcagacctccaaaagacgtccacctagcacaacttacctcagcaactttgaca
aaacttgaagaatttcgagataaaacagcaacaggtttgctgtatattattgaaacacag
aaagttcttgatctcagaattaatgtgaaggcttcatatgttattgtcccacagtatgga
atttttagccccacatcaaatctacttcttttggatcttggtcatttaaaggtgacaagt
aaaagtcgatcaggagtatcagaaatgaaaccaagtaacactagccttgaagagataatg
cataaagcttatgattcctttgatattcagcttacaagcatacagttgctttacagcaga
gtgggtgataactggaaagaagcacgaaagctcaatgtatcgacacagcatattttgaca
cctatgcacgtcaatgtagaactctctaaagccatggttttcatggatatcaagatgccc
aaattcaagatttctggaaaattacctcttatttcattacgaatctcggacaaaaaacta
caagggattatggaattgtttgaaagtattccaaaacctgaacccataactgatatgtct
gcccctgccaaatcattccagattcatgcatctactttgccagcatcacagatttctcag
aagttaatccctttattggaacagccttctgttgccgaagatgattcagaagaagaattt
tttgatgcaccatgtagtccattggaagagtatcctcaaatcctatctagagttagaagt
tctcgacacaaaaaattacaaaagaaagagtcttcagtgaatttaattcaacttaggatg
cgatttgaagtagcagaggttttgattcagttttatcacctcgtgggagactgtgaacta
cccgtgctagaaatgggtgttttaggattgggtactgaagttgagattagaacatttgat
ttgaaagcaaatgcctttttgaaagagttctggttaaaatgtccagaatacttagatgaa
aacaagaaaccaatttatttgatcaccaccctggataacacaatggaagatttgttaaca
ttggaatttgtgagggttgaaaaaaatgcacccagtttaaaaagtacttataacaatgtt
ttacaacttattaaggtgaatttttcctctttggatattcatttacacactgaagcactt
ctcaatacaatgaattatcttaataatacccttccgcaattaggggaacagtctgcccca
gtgtctgttgcagagactgaagacaaaggagatctcattaaaatgcttgctttaaagcta
cccacgaatgaagatactattaccttgcaacttttggctgaattgtcttgtttacggatt
tttattcaagatcagaaacaaaaaatttctgaaattaagattgaagggcttgattctgag
atgattatgaagccattagtcactgaaataaatgcaaaactaaggaatataattgtgtta
gattcggataaaatggctgtatataaaaaggctgtttatatcactggaaaagaagttttc
agcttcaaaatgatttcttacatgaatgcaactgctggctctgcatacacagatatgaat
gtggttgatgttcaagttaatttaactgttggttgcattgaagtcatgtttgtcacaaaa
ttcctatattctatattggattttatagataattttcaagcagttaaaaacgccttggct
gaagcaactgctcaagcagcaggaatggctgctgatggtgtaatggaactggctcgaagg
agttctaggcttgcattggatgttaacataaaagcccctattgtggtcattccgcagtct
ccagtgtctcacaatgtttttgttgctgattttggcttaattacaatgaaaaatacattt
gttactgtaacagaaatccagagtaatctcccacctgtaattgatttgataacaataaaa
ttgagtgaaatgagactatacaggtctcagtttatgactaatgcataccaggaagtgctt
gacctgctactacctttgaacctggaagtgattgttgaacgaaacttatcctgggaatgg
tacaaggaagttccttgtttaaatgtaaaagctcagctaaaacccatggagttcatcctt
agtcaagaagatttaacaaccatctttcaaacattgtatggtaatatatggtatggacga
gatgtttctgtcccatcttctgtaagtaaagacagcgaaatcatgactagtggagccaac
catgtttccaaccattcaggtaccatggtgacagctgctgtggtggaagtccacccccag
gcctctcaggttaacacgactctgaacgttagtttcaggactgattacctcaccatggca
ctttacagtccagggcctgaacaggccttctttacagatgttcgtgatccttctctgaaa
cttgctgaatttaaattggagaatattataagtagtttgaaactgtatacagatggctct
acattctcttcattctcattaaaaaactgtattttagatgataaaaggcctcatgtcatg
aaagccacgcctagaatgataggactgacacttgggtttgacaaaaaggacatggtggat
gtaaagtatagaagaatcagagatgcttttgtgactgacgcaattgtgcaagagatgtat
gtttgtgccagtgtggagtttctgatgactgttgcacatgtcttttttgatgcctacatg
actagtacagctttagaaaccagtgttcaagcatggactactaaagaagaacctccacag
gatttagggaagtgggaaataaatattctaataaaaaaccccgagattgtttttgtggct
gacatgacaaggaatgatgctcctgcgttagtcattacaacacagtgtgaaatttgctat
aaaggtgaccctgaaagcaatacagtgaccgctgccattaaagatctccaagtcagagca
tgcccatttcttccagccaagagaaagggcaaaatcaccactgttttacagccttgtgac
ttgttttatcaggcaactcagataggaacagatccacaaatgattgacatatcagtaaaa
tctcttacactaaaggtttcaccagttatcataaataccataataactattacttcagca
ctttatacaactaaggaaaccatcccagaagaaaacacttcttctatagcacatttatgg
gacaagaaggatactaagaatctgaaaatgtggtttcttgaagaatccgatgaaacagaa
aaagtagttccatcaaacgaattggtgccaggaggagagacactgaacttgaatattgat
tctatttttatagttctcgaagctggagttggtcatagaacagtgccgatgctgttggca
aagtcacgcattttgggggaaagcaaaaactggagtactttaataaatctccactgtcag
cttgagctggaagttcactactataacgaaatgtttggtgtttgggaacctttactggaa
cccttagaaattgatcagactgatgattttagaccatggaatcttggaatcaagatgaaa
aagaaagcaaaagagtccattgttgagtcagatagtgaagaagaaaactacaaagtacca
gaatataaaactgttataagtttttattctaaagaccaattaaacattacattatccaag
tgtggccttgtgatgttaaataatttagtcgaggcatttactgaagctgctactggatct
tcagctgtcttcctaagggatctagcaccatttatgattttaaattctcttggacttact
gtctctgtttcaccaagtgattcttttaatgtacttaatgttcctatggcaaaatcatat
gagctgaaaaatgaagagagtttaagtatggattatgtacgaactaaggacagtgatcat
ttcaatgcaatgaccagcctaagcagcaaactcttcttcattatccttacgcctgtaaac
cactctgctgctgacaagattccgttaacaaaagtgggacggcgtctgtacacagtaaga
cacagagagtctggagttgaaagatctattgtttgtcaaattgacacggttgaaggaagt
aagaaggtaacaatccgctcaccagtgcagattaagaatcatttttcaattccaatttcc
gtttttgaaggggatacgttattaggaattgcttcacctgaaaatgaattcaacatacca
ttagcatcttaccgatcatcgctttctttgaagccagatgataaggactaccaaatgtgt
gaaggaattgactttgaagaaatcataaaatatgatggacaacttctaaggaagaaatgc
aaatctatacacgcttctaagagatcatttgttattaatattgtcccagaaaaagataat
ttgacttctctgtcagtgtattcagaagacggctgggacttaccatacgtaatgcacttg
tggccgcctgtcctcattcggaatcttcttccctacaaaatcgtttattacctagagggc
attgaaaacacagtttttactttaagtgaaggacattcatcacaaatttataatgttgaa
atggacaaagccaagctgcacttaaaattgcttgactatcttaatcatgattggaaaagt
gaatttcatataaaacctaatcaacaagacatcaatttcatcaactttacctgtctcaca
gaaatggaaaagactgatttggatattgctattcatatgacttacaatacgggtcaaaca
attgtggcatttcatagtccatattggatggtcaataaaactgatcggatgttacagtac
aaagcagatggaatccaccgaaagcatccacctaattataaaaagccagttctcttttcc
tttcagccaaaccacttttttaacaacaataaggttcagcttatggtaactgacagtgag
ctctctgatcagttctcaattgatactgttggtagtcatggagccattaaatgcaaaggc
ctgaaaatggaataccaagttggtgtcactataaacctcagcagttttaatattaccaga
attgtggtatttactcctttttatatgattaaaaataaaagcaaataccgtatatcagtg
gcagaagaaggaagtgataaatggctctctcttgatttagatcagtgtattcccttctgg
cctgaggatgcctccaatattcttctcattcaagttgaaagaagtgaaggtccccccaaa
aggatacattttaacaagcaagacagttgtattttattgcgactgaataatgagcttgga
ggaattattgcagaagttaatttggctgagcactctacagttattacattttcagattac
catgatggtgcggctacattcctactaataaatcataccaagaatgaccttgttcagtac
aagcagagttctctcagtgaaatagaagattcccttcctcctggaaaagcagtatattat
acatgggctgatccagtgggttctagaaagctgaagtggagttgtgggcaaagtcatggt
gaagtaacacataaggatgatatgatgacccctataagtgtggggaaaaaaaccatttat
ttagtgtcattctttgaaggtttgcagcgcattattctattcactgaagacccaaaagtg
tttaaagtaacatatgaaagtgaaaaagcagagttagcagagcaagaaatcgtattggct
ttacaagatgttggaatttcacttgtcaataattatacaaaacaagaagtagcctatata
ggcattacaagttctgatgtggtttgggagacaaaaccaaagaaaaaagcaaggtggagg
ccaatgagtataaaacacaccgagaagctggagaaggagttcaaggaatacacagaatct
tcacctttggaagacaaggttattgagttggacaataacattccggttcgcttaacacct
agtggcaatgacatgaaaattctgcaaccacatgtgatagctgtacggagaaattacctc
ccagcactaaaagtagaatataacacatctgcacaccagtcatcattcagaattcagatt
tatagaatacagatccaaaaccagattcatggtgctatttttcctttcgtgttttatcct
attaaacctccaaagtctgtcaccatggactcagcaccaaagccctttacagatgttagc
attgtcatgagatctgcaggacattcccagatatcacgcattaagtatttcaaagtgttg
attcaagaaatggatctcagattggatcttgggtttgtgtatgccatagcagaccttgtc
acaaaagctgaggtgactgagaacacagaggttgaatattttcataaggatgtagaaacc
tttgaacaagagtatgaaacagtttcttcagtagatcaatctcaaatcaatctctttgag
tatttccatatatctcctatcaagttacatttgagtgtttcactgagctctggtagagaa
gaagctaaagattcaggacaacgtggaggactgattcctgttcattctttaaatcttttg
ctgaagagtattggtgccacccttacagatgtgcaagatgtagtttttaaacttgccttt
tttgaactcaactaccagttccgcacaacatctgaactgcaatctgaagtaataagacac
tattcaaaacaggctattaagcaaatgtatgtactcattctcggacttgatgttttggga
aatccctttggcttaattagagaattttcagaaggcgtagaagcatttttttatgaacct
taccagggagccatccagggccctgaagagtttgtggagggaatggcactaggactgaaa
gcactggttggcggagctgttggtggtctagctggtgctgcctccaaaatcaccagtgcg
atggctaaaggagtagcagccatgacaatggatgaagactaccagcagaaaagaagggaa
gcaatgaataagcagccagctggccttagagaaggcatcactcgtggaggaaaaggcctg
gtttctggttttgtaagtggcattacagggattgttacaaaaccaattaaaggtgctcaa
aaggaaggtgcagcgggtttcttcaaaggcgtcgggaaaggtttagttggagcagtggca
aggccaacaggtggcatcatagacatggccagcagtacctttcaggggatcaaaagagct
acagagacttttgaagtagaaagtctgcgacctccccggttctttaatgaagatggagtt
atccgaccttacaggctgagggatggtacaggaaatcaaatgttacaggtcatggaaaat
ggaagatttgcaaaatgcaagtattttacccatgtcatgatcaacaaaacagatatgttc
atgataacaagaagtggtgtgttgtttgtaacaaagggaacatttggacaacttacatgt
gaatggcagtatagttttgatgagtttaccaaagagccattcattgttcatgggagaaga
ctgcgtattgaagcaaaggaacgagtgaaatctgtatttcatgccaaagaatttgggaaa
ataattaacttcaagactccagaggatgctaggtggatccttacaaagctggaagaggca
agagaaccatctccgagcctgtga
DBGET
integrated database retrieval system
